Experiment: R2A with Ceftazidime 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3352 and Atu3353 are separated by 304 nucleotides Atu3353 and Atu3354 are separated by 280 nucleotides
Atu3352: Atu3352 - sugar ABC transporter substrate-binding protein, at 385,597 to 386,829
Atu3352
Atu3353: Atu3353 - mannose-1-phosphate guanylyltransferase, at 387,134 to 388,564
Atu3353
Atu3354: Atu3354 - pyrroloquinoline-quinone-dependent quinate dehydrogenase, at 388,845 to 391,253
Atu3354
Position (kb) 387
388
389 Strain fitness (log2 ratio) -1
0
1 at 386.355 kb on + strand, within Atu3352 at 386.466 kb on + strand, within Atu3352 at 386.487 kb on + strand, within Atu3352 at 386.575 kb on - strand, within Atu3352 at 386.611 kb on + strand, within Atu3352 at 386.614 kb on + strand, within Atu3352 at 386.623 kb on + strand, within Atu3352 at 386.698 kb on - strand, within Atu3352 at 386.756 kb on - strand at 386.982 kb on - strand at 387.029 kb on - strand at 387.118 kb on + strand at 387.129 kb on + strand at 387.134 kb on + strand at 387.319 kb on - strand, within Atu3353 at 387.364 kb on - strand, within Atu3353 at 387.414 kb on + strand, within Atu3353 at 387.429 kb on + strand, within Atu3353 at 387.442 kb on - strand, within Atu3353 at 387.444 kb on + strand, within Atu3353 at 387.444 kb on + strand, within Atu3353 at 387.452 kb on - strand, within Atu3353 at 387.581 kb on - strand, within Atu3353 at 387.591 kb on + strand, within Atu3353 at 387.736 kb on + strand, within Atu3353 at 387.830 kb on - strand, within Atu3353 at 387.926 kb on - strand, within Atu3353 at 387.926 kb on - strand, within Atu3353 at 387.926 kb on - strand, within Atu3353 at 387.926 kb on - strand, within Atu3353 at 387.926 kb on - strand, within Atu3353 at 387.968 kb on + strand, within Atu3353 at 388.031 kb on + strand, within Atu3353 at 388.041 kb on + strand, within Atu3353 at 388.201 kb on + strand, within Atu3353 at 388.302 kb on + strand, within Atu3353 at 388.395 kb on + strand, within Atu3353 at 388.395 kb on + strand, within Atu3353 at 388.428 kb on - strand at 388.500 kb on - strand at 388.503 kb on - strand at 388.610 kb on + strand at 388.846 kb on + strand at 389.118 kb on + strand, within Atu3354 at 389.161 kb on + strand, within Atu3354 at 389.281 kb on + strand, within Atu3354 at 389.301 kb on - strand, within Atu3354 at 389.350 kb on + strand, within Atu3354 at 389.350 kb on + strand, within Atu3354 at 389.373 kb on - strand, within Atu3354 at 389.540 kb on - strand, within Atu3354
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Ceftazidime 4 mM remove 386,355 + Atu3352 0.61 -0.6 386,466 + Atu3352 0.70 -0.3 386,487 + Atu3352 0.72 +0.1 386,575 - Atu3352 0.79 +0.6 386,611 + Atu3352 0.82 -0.7 386,614 + Atu3352 0.82 +0.5 386,623 + Atu3352 0.83 +0.1 386,698 - Atu3352 0.89 +0.6 386,756 - +0.5 386,982 - +0.6 387,029 - -0.2 387,118 + -0.9 387,129 + +0.2 387,134 + +0.1 387,319 - Atu3353 0.13 +0.4 387,364 - Atu3353 0.16 -0.6 387,414 + Atu3353 0.20 -1.1 387,429 + Atu3353 0.21 -1.0 387,442 - Atu3353 0.22 -0.6 387,444 + Atu3353 0.22 -1.0 387,444 + Atu3353 0.22 -0.6 387,452 - Atu3353 0.22 -0.5 387,581 - Atu3353 0.31 -1.3 387,591 + Atu3353 0.32 -1.1 387,736 + Atu3353 0.42 -1.4 387,830 - Atu3353 0.49 -1.6 387,926 - Atu3353 0.55 -0.9 387,926 - Atu3353 0.55 +0.0 387,926 - Atu3353 0.55 -1.0 387,926 - Atu3353 0.55 +0.3 387,926 - Atu3353 0.55 -0.2 387,968 + Atu3353 0.58 +1.5 388,031 + Atu3353 0.63 -0.7 388,041 + Atu3353 0.63 -1.0 388,201 + Atu3353 0.75 +0.4 388,302 + Atu3353 0.82 -0.7 388,395 + Atu3353 0.88 -1.6 388,395 + Atu3353 0.88 -1.1 388,428 - -0.0 388,500 - -0.8 388,503 - -1.1 388,610 + +0.3 388,846 + -0.3 389,118 + Atu3354 0.11 +1.5 389,161 + Atu3354 0.13 -0.2 389,281 + Atu3354 0.18 -0.6 389,301 - Atu3354 0.19 +0.4 389,350 + Atu3354 0.21 -0.9 389,350 + Atu3354 0.21 +0.4 389,373 - Atu3354 0.22 -0.3 389,540 - Atu3354 0.29 +0.5
Or see this region's nucleotide sequence