Experiment: R2A with Ceftazidime 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3041 and Atu3042 are separated by 115 nucleotides Atu3042 and Atu3043 overlap by 4 nucleotides
Atu3041: Atu3041 - dipeptide ABC transporter substrate-binding protein, at 36,341 to 37,954
Atu3041
Atu3042: Atu3042 - hypothetical protein, at 38,070 to 39,146
Atu3042
Atu3043: Atu3043 - hydantoinase beta subunit-like protein, at 39,143 to 40,681
Atu3043
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.072 kb on - strand, within Atu3041 at 37.128 kb on + strand, within Atu3041 at 37.176 kb on - strand, within Atu3041 at 37.194 kb on - strand, within Atu3041 at 37.217 kb on + strand, within Atu3041 at 37.234 kb on + strand, within Atu3041 at 37.235 kb on - strand, within Atu3041 at 37.288 kb on + strand, within Atu3041 at 37.296 kb on - strand, within Atu3041 at 37.405 kb on + strand, within Atu3041 at 37.455 kb on - strand, within Atu3041 at 37.464 kb on - strand, within Atu3041 at 37.464 kb on - strand, within Atu3041 at 37.518 kb on + strand, within Atu3041 at 37.526 kb on - strand, within Atu3041 at 37.618 kb on + strand, within Atu3041 at 37.624 kb on + strand, within Atu3041 at 37.659 kb on + strand, within Atu3041 at 37.677 kb on - strand, within Atu3041 at 37.824 kb on - strand at 37.828 kb on + strand at 37.852 kb on + strand at 37.879 kb on + strand at 37.910 kb on + strand at 37.964 kb on + strand at 38.025 kb on - strand at 38.044 kb on + strand at 38.215 kb on - strand, within Atu3042 at 38.223 kb on - strand, within Atu3042 at 38.289 kb on + strand, within Atu3042 at 38.330 kb on - strand, within Atu3042 at 38.397 kb on + strand, within Atu3042 at 38.397 kb on + strand, within Atu3042 at 38.475 kb on + strand, within Atu3042 at 38.681 kb on + strand, within Atu3042 at 38.792 kb on + strand, within Atu3042 at 38.833 kb on + strand, within Atu3042 at 39.027 kb on - strand, within Atu3042 at 39.037 kb on - strand, within Atu3042 at 39.039 kb on + strand at 39.081 kb on - strand at 39.156 kb on + strand at 39.164 kb on - strand at 39.245 kb on + strand at 39.258 kb on - strand at 39.263 kb on - strand at 39.330 kb on + strand, within Atu3043 at 39.338 kb on - strand, within Atu3043 at 39.361 kb on - strand, within Atu3043 at 39.391 kb on + strand, within Atu3043 at 39.393 kb on + strand, within Atu3043 at 39.454 kb on - strand, within Atu3043 at 39.454 kb on - strand, within Atu3043 at 39.467 kb on + strand, within Atu3043 at 39.624 kb on + strand, within Atu3043 at 39.673 kb on + strand, within Atu3043 at 39.681 kb on - strand, within Atu3043 at 39.692 kb on - strand, within Atu3043 at 39.705 kb on + strand, within Atu3043 at 39.705 kb on + strand, within Atu3043 at 39.733 kb on + strand, within Atu3043 at 39.741 kb on - strand, within Atu3043 at 39.751 kb on - strand, within Atu3043 at 39.753 kb on + strand, within Atu3043 at 39.822 kb on + strand, within Atu3043 at 39.878 kb on + strand, within Atu3043 at 39.899 kb on - strand, within Atu3043 at 39.923 kb on + strand, within Atu3043 at 40.068 kb on + strand, within Atu3043
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Ceftazidime 4 mM remove 37,072 - Atu3041 0.45 -0.4 37,128 + Atu3041 0.49 -0.5 37,176 - Atu3041 0.52 -0.4 37,194 - Atu3041 0.53 -1.0 37,217 + Atu3041 0.54 -2.0 37,234 + Atu3041 0.55 -0.3 37,235 - Atu3041 0.55 +0.0 37,288 + Atu3041 0.59 +0.2 37,296 - Atu3041 0.59 +0.2 37,405 + Atu3041 0.66 +0.1 37,455 - Atu3041 0.69 -0.3 37,464 - Atu3041 0.70 +0.0 37,464 - Atu3041 0.70 -1.3 37,518 + Atu3041 0.73 -0.1 37,526 - Atu3041 0.73 +1.2 37,618 + Atu3041 0.79 +0.2 37,624 + Atu3041 0.79 -0.2 37,659 + Atu3041 0.82 -0.9 37,677 - Atu3041 0.83 -0.0 37,824 - +1.2 37,828 + -0.3 37,852 + -0.4 37,879 + -0.1 37,910 + -0.6 37,964 + -0.6 38,025 - +0.1 38,044 + -0.9 38,215 - Atu3042 0.13 -1.1 38,223 - Atu3042 0.14 -0.3 38,289 + Atu3042 0.20 +0.4 38,330 - Atu3042 0.24 -0.5 38,397 + Atu3042 0.30 -1.1 38,397 + Atu3042 0.30 -1.3 38,475 + Atu3042 0.38 -0.3 38,681 + Atu3042 0.57 +0.2 38,792 + Atu3042 0.67 -0.1 38,833 + Atu3042 0.71 -1.5 39,027 - Atu3042 0.89 -1.3 39,037 - Atu3042 0.90 -0.8 39,039 + -0.9 39,081 - -0.5 39,156 + -0.7 39,164 - +0.2 39,245 + -0.2 39,258 - -0.2 39,263 - -0.1 39,330 + Atu3043 0.12 -0.2 39,338 - Atu3043 0.13 +2.0 39,361 - Atu3043 0.14 -0.6 39,391 + Atu3043 0.16 -0.2 39,393 + Atu3043 0.16 -1.3 39,454 - Atu3043 0.20 +0.4 39,454 - Atu3043 0.20 +0.5 39,467 + Atu3043 0.21 -0.5 39,624 + Atu3043 0.31 +1.3 39,673 + Atu3043 0.34 +1.1 39,681 - Atu3043 0.35 -0.3 39,692 - Atu3043 0.36 -0.3 39,705 + Atu3043 0.37 +1.2 39,705 + Atu3043 0.37 -0.4 39,733 + Atu3043 0.38 +0.2 39,741 - Atu3043 0.39 -0.1 39,751 - Atu3043 0.40 +0.0 39,753 + Atu3043 0.40 +0.1 39,822 + Atu3043 0.44 -1.0 39,878 + Atu3043 0.48 -0.1 39,899 - Atu3043 0.49 -0.5 39,923 + Atu3043 0.51 -0.1 40,068 + Atu3043 0.60 -0.4
Or see this region's nucleotide sequence