Strain Fitness in Agrobacterium fabrum C58 around Atu2506

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
2,473,587	-		Atu2505	0.40	+0.2
2,473,703	-		Atu2505	0.49	+0.8
2,473,703	-		Atu2505	0.49	+0.7
2,473,716	+		Atu2505	0.50	-0.6
2,473,724	-		Atu2505	0.51	-0.0
2,473,732	-		Atu2505	0.51	+0.6
2,473,794	-		Atu2505	0.56	-0.4
2,473,796	+		Atu2505	0.56	+0.8
2,473,990	+		Atu2505	0.71	+0.1
2,474,018	+		Atu2505	0.73	+1.2
2,474,025	-		Atu2505	0.73	+0.0
2,474,054	+		Atu2505	0.76	+1.1
2,474,062	-		Atu2505	0.76	-0.1
2,474,090	+		Atu2505	0.78	+0.2
2,474,096	-		Atu2505	0.79	+1.2
2,474,112	+		Atu2505	0.80	+0.2
2,474,139	+		Atu2505	0.82	+0.3
2,474,147	-		Atu2505	0.83	+0.8
2,474,170	+		Atu2505	0.84	-0.3
2,474,346	+				-0.4
2,474,349	-				-0.1
2,474,412	+				-0.3
2,474,435	-				-0.5
2,474,435	-				-0.2
2,474,435	-				+0.4
2,474,435	-				+2.1
2,474,448	-				+0.5
2,474,519	+		Atu2506	0.15	+0.1
2,474,519	+		Atu2506	0.15	+0.5
2,474,519	+		Atu2506	0.15	+0.3
2,474,537	-		Atu2506	0.17	-0.3
2,474,537	-		Atu2506	0.17	-0.2
2,474,539	-		Atu2506	0.17	+0.2
2,474,554	+		Atu2506	0.19	-1.1
2,474,562	-		Atu2506	0.19	+0.4
2,474,601	-		Atu2506	0.24	-0.6
2,474,645	+		Atu2506	0.28	-0.0
2,474,645	+		Atu2506	0.28	-0.7
2,474,645	+		Atu2506	0.28	-0.3
2,474,645	+		Atu2506	0.28	-0.5
2,474,645	+		Atu2506	0.28	-0.1
2,474,645	+		Atu2506	0.28	+1.4
2,474,645	+		Atu2506	0.28	+0.2
2,474,645	+		Atu2506	0.28	-0.2
2,474,645	+		Atu2506	0.28	-0.1
2,474,653	-		Atu2506	0.29	-0.2
2,474,653	-		Atu2506	0.29	+0.3
2,474,653	-		Atu2506	0.29	-0.4
2,474,653	-		Atu2506	0.29	+0.4
2,474,653	-		Atu2506	0.29	+0.2
2,474,653	-		Atu2506	0.29	-0.3
2,474,653	-		Atu2506	0.29	-0.3
2,474,673	+		Atu2506	0.31	-0.1
2,474,797	-		Atu2506	0.45	-0.8
2,474,797	-		Atu2506	0.45	-0.1
2,474,797	-		Atu2506	0.45	+0.0
2,474,797	-		Atu2506	0.45	+0.9
2,474,811	-		Atu2506	0.46	+0.3
2,474,831	-		Atu2506	0.48	+0.4
2,474,831	-		Atu2506	0.48	-0.3
2,474,909	+		Atu2506	0.56	+0.3
2,474,936	+		Atu2506	0.59	+0.3
2,474,945	+		Atu2506	0.60	+1.3
2,474,954	+		Atu2506	0.61	+0.0
2,474,967	+		Atu2506	0.63	-0.4
2,474,975	+		Atu2506	0.63	+0.5
2,474,990	-		Atu2506	0.65	+0.2
2,474,990	-		Atu2506	0.65	-0.7
2,475,034	+		Atu2506	0.70	-1.1
2,475,098	+		Atu2506	0.77	-1.3
2,475,257	+				+0.4
2,475,306	+				+1.2
2,475,309	-				-0.2
2,475,316	+				+0.5
2,475,501	+		Atu2507	0.22	-0.1
2,475,509	-		Atu2507	0.23	+0.1
2,475,594	-		Atu2507	0.33	-0.5
2,475,669	+		Atu2507	0.42	+0.2
2,475,787	+		Atu2507	0.56	-0.2
2,475,823	+		Atu2507	0.60	-0.4
2,475,830	-		Atu2507	0.61	-0.1
2,475,831	-		Atu2507	0.61	-1.1
2,475,975	+		Atu2507	0.79	-0.3
2,476,004	+		Atu2507	0.82	+0.4
2,476,035	+		Atu2507	0.86	+0.3
2,476,035	+		Atu2507	0.86	-2.9
2,476,038	-		Atu2507	0.86	+0.2
2,476,038	-		Atu2507	0.86	+0.9
2,476,043	-		Atu2507	0.87	-1.1
2,476,109	-				-0.5
2,476,124	-				+0.0
2,476,174	-				+0.5
2,476,174	-				-0.4
2,476,263	-				-1.2
2,476,281	+				+0.9
2,476,297	+				-0.1