Strain Fitness in Agrobacterium fabrum C58 around Atu2486

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
2,453,598	+		Atu2484	0.88	-0.4
2,453,605	+				-0.2
2,453,605	+				+0.2
2,453,676	-				+0.1
2,453,702	+				+0.7
2,453,827	+		Atu2485	0.20	-0.0
2,453,952	+		Atu2485	0.35	+0.8
2,454,045	-		Atu2485	0.46	+1.6
2,454,061	+		Atu2485	0.48	+1.0
2,454,061	+		Atu2485	0.48	-0.2
2,454,069	-		Atu2485	0.49	+1.6
2,454,108	+		Atu2485	0.54	+0.7
2,454,108	+		Atu2485	0.54	-2.0
2,454,116	-		Atu2485	0.55	+0.4
2,454,153	-		Atu2485	0.59	+0.2
2,454,159	-		Atu2485	0.60	+0.1
2,454,207	-		Atu2485	0.65	+0.4
2,454,217	-		Atu2485	0.67	+0.4
2,454,224	-		Atu2485	0.67	+0.5
2,454,224	-		Atu2485	0.67	+0.1
2,454,226	+		Atu2485	0.68	-0.0
2,454,293	+		Atu2485	0.76	+0.6
2,454,435	+				+0.2
2,454,523	+				-0.7
2,454,860	-		Atu2486	0.21	-0.1
2,454,940	-		Atu2486	0.27	+0.0
2,455,070	+		Atu2486	0.36	+0.7
2,455,129	+		Atu2486	0.40	-0.8
2,455,129	+		Atu2486	0.40	+0.5
2,455,157	-		Atu2486	0.42	-2.6
2,455,167	+		Atu2486	0.42	+0.0
2,455,304	+		Atu2486	0.52	-0.2
2,455,351	+		Atu2486	0.55	+1.3
2,455,375	-		Atu2486	0.57	-0.3
2,455,415	-		Atu2486	0.59	+0.2
2,455,417	-		Atu2486	0.59	-0.1
2,455,417	-		Atu2486	0.59	-1.6
2,455,417	-		Atu2486	0.59	+0.5
2,455,481	+		Atu2486	0.64	-0.2
2,455,481	+		Atu2486	0.64	-0.1
2,455,496	+		Atu2486	0.65	-0.1
2,455,781	+		Atu2486	0.84	+0.2
2,455,789	-		Atu2486	0.85	-0.4
2,455,839	+		Atu2486	0.88	+0.7
2,455,848	-		Atu2486	0.89	-0.3
2,455,956	+				-0.9
2,455,967	+				-0.1
2,455,967	-				-0.7
2,456,017	-				-0.8
2,456,025	-				-0.2
2,456,099	+				+0.1
2,456,165	+				+0.6
2,456,178	-				-0.1
2,456,228	+				+0.5
2,456,364	-		Atu2487	0.16	-0.3
2,456,418	+		Atu2487	0.22	-0.2
2,456,418	+		Atu2487	0.22	+0.1
2,456,457	+		Atu2487	0.27	+0.2
2,456,457	+		Atu2487	0.27	+0.1
2,456,465	-		Atu2487	0.28	+0.4
2,456,467	+		Atu2487	0.28	+0.1
2,456,499	+		Atu2487	0.32	+0.2
2,456,502	-		Atu2487	0.32	-2.2
2,456,544	-		Atu2487	0.37	-0.1
2,456,592	+		Atu2487	0.42	+0.2
2,456,668	-		Atu2487	0.51	+0.2
2,456,708	-		Atu2487	0.56	+0.5
2,456,801	+		Atu2487	0.66	-0.2
2,456,833	+		Atu2487	0.70	-0.8
2,456,907	+		Atu2487	0.78	+0.1
2,456,965	+		Atu2487	0.85	-0.3