Strain Fitness in Agrobacterium fabrum C58 around Atu1779

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
1,765,026	-		Atu1778	0.72	-0.1
1,765,039	+		Atu1778	0.73	-2.2
1,765,171	+		Atu1778	0.77	-0.0
1,765,198	+		Atu1778	0.77	-0.6
1,765,240	+		Atu1778	0.79	-0.6
1,765,248	-		Atu1778	0.79	-1.8
1,765,333	-		Atu1778	0.81	-1.2
1,765,357	-		Atu1778	0.82	+0.3
1,765,357	-		Atu1778	0.82	-2.4
1,765,372	+		Atu1778	0.82	-2.2
1,765,391	+		Atu1778	0.83	+0.2
1,765,469	+		Atu1778	0.85	-0.2
1,765,618	-		Atu1778	0.89	-0.4
1,765,763	-				-0.3
1,765,795	+				-0.7
1,765,826	+				-0.1
1,765,861	+				+0.4
1,766,035	+		Atu1779	0.13	-0.9
1,766,316	-				-0.5
1,766,323	-				+2.0
1,766,337	-				-0.3
1,766,466	+				+1.1
1,766,524	+				+0.2
1,766,539	-				+1.4
1,766,544	-				-0.3
1,766,600	-				-1.4
1,766,638	+				-0.4
1,766,950	+		Atu1780	0.22	+0.1
1,766,958	-		Atu1780	0.22	+1.8
1,767,059	+		Atu1780	0.27	-1.8
1,767,087	+		Atu1780	0.28	-0.6
1,767,235	-		Atu1780	0.35	-0.9
1,767,235	-		Atu1780	0.35	+0.4
1,767,278	-		Atu1780	0.37	-0.5