Strain Fitness in Agrobacterium fabrum C58 around Atu1332

Experiment: R2A with Ceftazidime 4 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu1330 and Atu1331 are separated by 12 nucleotidesAtu1331 and Atu1332 are separated by 25 nucleotidesAtu1332 and Atu1333 are separated by 125 nucleotides Atu1330: Atu1330 - acetyl-CoA carboxylase, biotin carboxylase, at 1,316,847 to 1,318,193 Atu1330 Atu1331: Atu1331 - acetyl-CoA carboxylase, biotin carboxyl carrier protein, at 1,318,206 to 1,318,694 Atu1331 Atu1332: Atu1332 - 3-dehydroquinate dehydratase, at 1,318,720 to 1,319,157 Atu1332 Atu1333: Atu1333 - outer membrane protein, at 1,319,283 to 1,320,050 Atu1333 Position (kb) 1318 1319 1320Strain fitness (log2 ratio) -1 0 1at 1319.428 kb on - strand, within Atu1333at 1319.707 kb on + strand, within Atu1333at 1319.820 kb on - strand, within Atu1333at 1319.996 kb on - strandat 1320.026 kb on + strandat 1320.071 kb on + strandat 1320.089 kb on - strandat 1320.148 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Ceftazidime 4 mM
remove
1,319,428 - Atu1333 0.19 +1.4
1,319,707 + Atu1333 0.55 +0.7
1,319,820 - Atu1333 0.70 +1.2
1,319,996 - -0.4
1,320,026 + +1.2
1,320,071 + +0.9
1,320,089 - -0.1
1,320,148 + +0.7

Or see this region's nucleotide sequence