Strain Fitness in Agrobacterium fabrum C58 around Atu1048

Experiment: R2A with Ceftazidime 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ceftazidime 4 mM
1,041,170	+				+0.7
1,041,178	-				-0.1
1,041,178	-				+0.5
1,041,178	-				+0.1
1,041,180	-				+0.3
1,041,204	-				-0.2
1,041,204	-				-0.3
1,041,204	-				-0.1
1,041,312	-				+0.1
1,041,320	+				-0.3
1,041,369	-				-0.0
1,041,408	+				+0.2
1,041,416	-				-0.4
1,041,417	-				+0.3
1,041,482	+		Atu1047	0.15	-0.1
1,041,699	+		Atu1047	0.44	-0.1
1,041,724	+		Atu1047	0.47	+0.3
1,041,855	+		Atu1047	0.64	+0.8
1,041,863	-		Atu1047	0.65	+0.1
1,041,863	-		Atu1047	0.65	-0.9
1,041,870	+		Atu1047	0.66	-0.6
1,041,872	+		Atu1047	0.67	-0.4
1,041,875	+		Atu1047	0.67	-0.3
1,041,916	-		Atu1047	0.72	-0.1
1,041,931	+		Atu1047	0.74	-0.9
1,041,931	+		Atu1047	0.74	-0.2
1,041,931	+		Atu1047	0.74	-0.2
1,041,939	-		Atu1047	0.75	+0.5
1,041,939	-		Atu1047	0.75	-0.3
1,041,939	-		Atu1047	0.75	+0.5
1,042,106	+				+1.6
1,042,114	-				+0.4
1,042,114	-				-0.1
1,042,140	+				+0.2
1,042,140	+				+1.2
1,042,165	+				+0.7
1,042,188	-				+0.2
1,042,189	+				-0.2
1,042,189	+				+0.8
1,042,194	+				-0.3
1,042,197	-				+0.9
1,042,293	+		Atu1048	0.21	-0.4
1,042,301	-		Atu1048	0.22	-0.7
1,042,301	-		Atu1048	0.22	-0.2
1,042,318	-		Atu1048	0.24	+0.1
1,042,359	-		Atu1048	0.29	+0.1
1,042,364	+		Atu1048	0.30	-0.2
1,042,372	-		Atu1048	0.31	+1.4
1,042,372	-		Atu1048	0.31	-0.6
1,042,537	-		Atu1048	0.51	+0.0
1,042,828	-		Atu1048	0.86	+0.6
1,042,853	+		Atu1048	0.89	-0.3
1,042,885	-				-0.1
1,043,048	-				+0.1
1,043,130	+		Atu1049	0.20	+0.3
1,043,262	+		Atu1049	0.40	-0.7
1,043,355	+		Atu1049	0.53	+0.0
1,043,431	+		Atu1049	0.64	+0.2
1,043,431	+		Atu1049	0.64	+0.0
1,043,431	+		Atu1049	0.64	+0.4
1,043,431	+		Atu1049	0.64	-2.0
1,043,482	+		Atu1049	0.72	+0.2
1,043,548	+		Atu1049	0.81	+0.5
1,043,560	+		Atu1049	0.83	-0.2
1,043,631	-				-0.2
1,043,758	+				-1.5
1,043,856	-				+0.0
1,043,861	-				-0.4
1,043,868	-				+0.9
1,043,895	-				-0.9