Experiment: R2A with Ceftazidime 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0967 and Atu0968 are separated by 1 nucleotides Atu0968 and Atu8142 are separated by 139 nucleotides Atu8142 and Atu0970 are separated by 93 nucleotides Atu0970 and Atu0971 overlap by 11 nucleotides
Atu0967: Atu0967 - hypothetical protein, at 954,323 to 958,123
Atu0967
Atu0968: Atu0968 - hypothetical protein, at 958,125 to 958,364
Atu0968
Atu8142: Atu8142 - hypothetical protein, at 958,504 to 958,758
Atu8142
Atu0970: Atu0970 - two component response regulator, at 958,852 to 959,523
Atu0970
Atu0971: Atu0971 - two component sensor kinase, at 959,513 to 960,913
Atu0971
Position (kb) 958
959
960 Strain fitness (log2 ratio) -2
-1
0
1 at 957.863 kb on + strand at 957.870 kb on + strand at 957.896 kb on - strand at 957.944 kb on + strand at 957.952 kb on + strand at 957.969 kb on + strand at 957.980 kb on - strand at 958.002 kb on + strand at 958.072 kb on + strand at 958.163 kb on - strand, within Atu0968 at 958.163 kb on - strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.165 kb on + strand, within Atu0968 at 958.174 kb on - strand, within Atu0968 at 958.178 kb on + strand, within Atu0968 at 958.179 kb on + strand, within Atu0968 at 958.235 kb on - strand, within Atu0968 at 958.260 kb on + strand, within Atu0968 at 958.260 kb on + strand, within Atu0968 at 958.284 kb on + strand, within Atu0968 at 958.287 kb on - strand, within Atu0968 at 958.289 kb on + strand, within Atu0968 at 958.297 kb on - strand, within Atu0968 at 958.326 kb on + strand, within Atu0968 at 958.326 kb on + strand, within Atu0968 at 958.334 kb on - strand, within Atu0968 at 958.345 kb on - strand at 958.867 kb on + strand at 959.105 kb on - strand, within Atu0970 at 959.230 kb on - strand, within Atu0970 at 959.333 kb on - strand, within Atu0970 at 959.518 kb on + strand at 959.676 kb on - strand, within Atu0971 at 959.676 kb on - strand, within Atu0971 at 959.763 kb on + strand, within Atu0971 at 959.766 kb on - strand, within Atu0971 at 959.804 kb on + strand, within Atu0971 at 959.915 kb on - strand, within Atu0971 at 960.144 kb on - strand, within Atu0971 at 960.242 kb on - strand, within Atu0971 at 960.380 kb on + strand, within Atu0971
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Ceftazidime 4 mM remove 957,863 + -0.0 957,870 + -0.6 957,896 - -0.5 957,944 + +0.4 957,952 + +1.0 957,969 + +0.7 957,980 - -0.0 958,002 + -0.1 958,072 + +0.2 958,163 - Atu0968 0.16 +0.9 958,163 - Atu0968 0.16 -0.4 958,165 + Atu0968 0.17 -0.7 958,165 + Atu0968 0.17 -0.0 958,165 + Atu0968 0.17 -2.0 958,174 - Atu0968 0.20 +0.2 958,178 + Atu0968 0.22 -1.4 958,179 + Atu0968 0.23 +0.3 958,235 - Atu0968 0.46 +0.1 958,260 + Atu0968 0.56 -0.1 958,260 + Atu0968 0.56 +0.3 958,284 + Atu0968 0.66 +0.7 958,287 - Atu0968 0.68 +0.4 958,289 + Atu0968 0.68 -0.8 958,297 - Atu0968 0.72 -0.5 958,326 + Atu0968 0.84 +0.6 958,326 + Atu0968 0.84 +1.5 958,334 - Atu0968 0.87 -0.4 958,345 - +0.5 958,867 + -1.9 959,105 - Atu0970 0.38 -0.2 959,230 - Atu0970 0.56 -1.5 959,333 - Atu0970 0.72 -0.6 959,518 + +0.2 959,676 - Atu0971 0.12 +0.6 959,676 - Atu0971 0.12 -1.3 959,763 + Atu0971 0.18 -2.0 959,766 - Atu0971 0.18 +0.7 959,804 + Atu0971 0.21 -0.5 959,915 - Atu0971 0.29 -1.0 960,144 - Atu0971 0.45 -1.0 960,242 - Atu0971 0.52 -2.3 960,380 + Atu0971 0.62 -1.4
Or see this region's nucleotide sequence