Experiment: R2A with Ceftazidime 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0812 and Atu0813 are separated by 52 nucleotides Atu0813 and Atu0814 are separated by 264 nucleotides Atu0814 and Atu0815 are separated by 426 nucleotides Atu0815 and Atu0816 are separated by 221 nucleotides
Atu0812: Atu0812 - hypothetical protein, at 812,192 to 812,401
Atu0812
Atu0813: Atu0813 - hypothetical protein, at 812,454 to 812,876
Atu0813
Atu0814: Atu0814 - tRNA-Pro, at 813,141 to 813,217
Atu0814
Atu0815: Atu0815 - hypothetical protein, at 813,644 to 813,805
Atu0815
Atu0816: Atu0816 - sulfate adenylate transferase, subunit 1, at 814,027 to 815,511
Atu0816
Position (kb) 813
814 Strain fitness (log2 ratio) -2
-1
0
1
2 at 812.194 kb on - strand at 812.270 kb on + strand, within Atu0812 at 812.344 kb on - strand, within Atu0812 at 812.346 kb on + strand, within Atu0812 at 812.346 kb on + strand, within Atu0812 at 812.431 kb on - strand at 812.431 kb on - strand at 812.433 kb on + strand at 812.433 kb on + strand at 812.447 kb on + strand at 812.466 kb on + strand at 812.508 kb on + strand, within Atu0813 at 812.516 kb on - strand, within Atu0813 at 812.566 kb on + strand, within Atu0813 at 812.566 kb on + strand, within Atu0813 at 812.566 kb on + strand, within Atu0813 at 812.566 kb on + strand, within Atu0813 at 812.566 kb on + strand, within Atu0813 at 812.566 kb on + strand, within Atu0813 at 812.566 kb on + strand, within Atu0813 at 812.566 kb on + strand, within Atu0813 at 812.574 kb on - strand, within Atu0813 at 812.574 kb on - strand, within Atu0813 at 812.574 kb on - strand, within Atu0813 at 812.574 kb on - strand, within Atu0813 at 812.574 kb on - strand, within Atu0813 at 812.574 kb on - strand, within Atu0813 at 812.574 kb on - strand, within Atu0813 at 812.597 kb on - strand, within Atu0813 at 812.628 kb on - strand, within Atu0813 at 812.638 kb on - strand, within Atu0813 at 812.676 kb on + strand, within Atu0813 at 812.676 kb on + strand, within Atu0813 at 812.676 kb on + strand, within Atu0813 at 812.676 kb on + strand, within Atu0813 at 812.676 kb on + strand, within Atu0813 at 812.684 kb on - strand, within Atu0813 at 812.684 kb on - strand, within Atu0813 at 812.684 kb on - strand, within Atu0813 at 812.684 kb on - strand, within Atu0813 at 812.717 kb on - strand, within Atu0813 at 812.781 kb on + strand, within Atu0813 at 812.811 kb on + strand, within Atu0813 at 812.849 kb on - strand at 812.882 kb on + strand at 812.949 kb on + strand at 812.952 kb on + strand at 813.145 kb on + strand at 813.145 kb on + strand at 813.145 kb on + strand at 813.218 kb on + strand at 813.594 kb on + strand at 813.597 kb on - strand at 813.602 kb on - strand at 813.678 kb on + strand, within Atu0815 at 813.702 kb on - strand, within Atu0815 at 813.704 kb on + strand, within Atu0815 at 813.712 kb on - strand, within Atu0815 at 813.780 kb on + strand, within Atu0815 at 813.840 kb on + strand at 813.885 kb on + strand at 813.893 kb on - strand at 813.893 kb on - strand at 814.104 kb on - strand at 814.112 kb on + strand at 814.157 kb on - strand at 814.163 kb on + strand at 814.168 kb on + strand at 814.193 kb on - strand, within Atu0816 at 814.198 kb on - strand, within Atu0816 at 814.210 kb on - strand, within Atu0816 at 814.210 kb on - strand, within Atu0816
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Ceftazidime 4 mM remove 812,194 - -1.1 812,270 + Atu0812 0.37 +0.4 812,344 - Atu0812 0.72 +0.8 812,346 + Atu0812 0.73 -1.1 812,346 + Atu0812 0.73 -0.3 812,431 - -0.3 812,431 - -0.4 812,433 + +1.0 812,433 + +0.9 812,447 + +0.2 812,466 + +0.8 812,508 + Atu0813 0.13 +1.2 812,516 - Atu0813 0.15 +1.8 812,566 + Atu0813 0.26 +1.8 812,566 + Atu0813 0.26 +1.5 812,566 + Atu0813 0.26 +1.3 812,566 + Atu0813 0.26 +1.6 812,566 + Atu0813 0.26 +1.0 812,566 + Atu0813 0.26 +1.6 812,566 + Atu0813 0.26 +1.3 812,566 + Atu0813 0.26 +1.4 812,574 - Atu0813 0.28 +1.6 812,574 - Atu0813 0.28 +1.3 812,574 - Atu0813 0.28 +1.8 812,574 - Atu0813 0.28 +1.6 812,574 - Atu0813 0.28 +1.3 812,574 - Atu0813 0.28 +1.6 812,574 - Atu0813 0.28 +1.2 812,597 - Atu0813 0.34 +0.8 812,628 - Atu0813 0.41 +1.8 812,638 - Atu0813 0.43 +1.7 812,676 + Atu0813 0.52 +1.6 812,676 + Atu0813 0.52 +2.0 812,676 + Atu0813 0.52 +1.9 812,676 + Atu0813 0.52 +1.9 812,676 + Atu0813 0.52 +2.4 812,684 - Atu0813 0.54 +1.4 812,684 - Atu0813 0.54 +1.8 812,684 - Atu0813 0.54 +1.2 812,684 - Atu0813 0.54 +2.3 812,717 - Atu0813 0.62 +1.2 812,781 + Atu0813 0.77 +1.3 812,811 + Atu0813 0.84 +2.0 812,849 - +2.7 812,882 + +1.9 812,949 + +1.1 812,952 + +0.5 813,145 + +0.7 813,145 + -1.9 813,145 + +0.6 813,218 + -0.7 813,594 + +0.1 813,597 - +0.4 813,602 - +0.2 813,678 + Atu0815 0.21 +0.0 813,702 - Atu0815 0.36 +0.3 813,704 + Atu0815 0.37 +0.1 813,712 - Atu0815 0.42 +0.4 813,780 + Atu0815 0.84 +1.0 813,840 + -0.3 813,885 + -0.2 813,893 - +0.4 813,893 - -1.8 814,104 - +0.8 814,112 + +0.3 814,157 - +0.2 814,163 + +0.5 814,168 + -0.5 814,193 - Atu0816 0.11 -0.1 814,198 - Atu0816 0.12 +0.3 814,210 - Atu0816 0.12 -0.0 814,210 - Atu0816 0.12 +0.7
Or see this region's nucleotide sequence