Strain Fitness in Agrobacterium fabrum C58 around Atu0687

Experiment: R2A with Ceftazidime 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0686 and Atu0687 are separated by 151 nucleotidesAtu0687 and Atu0688 are separated by 54 nucleotidesAtu0688 and Atu0689 are separated by 71 nucleotides Atu0686: Atu0686 - isoleucyl-tRNA synthetase, at 680,863 to 683,766 Atu0686 Atu0687: Atu0687 - hypothetical protein, at 683,918 to 684,547 Atu0687 Atu0688: Atu0688 - cytidine and deoxycytidylate deaminase, at 684,602 to 685,060 Atu0688 Atu0689: Atu0689 - ribosomal large subunit pseudouridine synthase B, at 685,132 to 687,141 Atu0689 Position (kb) 683 684 685Strain fitness (log2 ratio) -1 0 1at 683.935 kb on + strandat 684.162 kb on - strand, within Atu0687at 684.352 kb on + strand, within Atu0687at 684.588 kb on - strandat 685.075 kb on + strandat 685.106 kb on - strandat 685.116 kb on - strandat 685.242 kb on + strandat 685.250 kb on - strandat 685.359 kb on - strand, within Atu0689at 685.482 kb on + strand, within Atu0689

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Ceftazidime 4 mM
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683,935 + -0.5
684,162 - Atu0687 0.39 -1.0
684,352 + Atu0687 0.69 -1.6
684,588 - +0.8
685,075 + +0.0
685,106 - -0.7
685,116 - -0.8
685,242 + +0.1
685,250 - -0.8
685,359 - Atu0689 0.11 -0.4
685,482 + Atu0689 0.17 -0.8

Or see this region's nucleotide sequence