Strain Fitness in Escherichia coli BW25113 around b2894
Experiment: capsaicin 2 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | capsaicin 2 mM |
---|---|---|---|---|---|
remove | |||||
3,035,869 | - | recJ | b2892 | 0.85 | +0.1 |
3,035,906 | - | recJ | b2892 | 0.87 | -0.2 |
3,035,906 | - | +1.7 | |||
3,035,960 | - | -0.1 | |||
3,035,996 | - | -0.7 | |||
3,035,996 | - | -1.3 | |||
3,035,996 | - | +0.0 | |||
3,036,046 | - | -0.4 | |||
3,036,068 | - | +0.2 | |||
3,036,229 | + | dsbC | b2893 | 0.13 | -0.5 |
3,036,229 | - | dsbC | b2893 | 0.13 | -0.5 |
3,036,268 | + | dsbC | b2893 | 0.19 | +0.7 |
3,036,457 | - | dsbC | b2893 | 0.45 | +0.3 |
3,036,511 | + | dsbC | b2893 | 0.53 | +0.1 |
3,036,511 | + | dsbC | b2893 | 0.53 | +0.3 |
3,036,613 | - | dsbC | b2893 | 0.67 | -0.1 |
3,036,626 | - | dsbC | b2893 | 0.69 | +0.7 |
3,036,660 | - | dsbC | b2893 | 0.74 | -0.2 |
3,036,660 | - | dsbC | b2893 | 0.74 | +0.8 |
3,036,666 | + | dsbC | b2893 | 0.75 | +0.1 |
3,036,668 | + | dsbC | b2893 | 0.75 | -0.1 |
3,036,761 | + | dsbC | b2893 | 0.88 | -0.2 |
3,037,372 | + | xerD | b2894 | 0.56 | -3.0 |
3,037,773 | + | +0.7 | |||
3,037,777 | + | +0.8 | |||
3,037,777 | + | -0.7 | |||
3,037,900 | + | -1.2 | |||
3,037,900 | + | -0.1 | |||
3,037,986 | - | fldB | b2895 | 0.21 | -0.3 |
3,038,097 | + | fldB | b2895 | 0.42 | +1.2 |
3,038,128 | + | fldB | b2895 | 0.48 | -0.8 |
3,038,128 | + | fldB | b2895 | 0.48 | -0.6 |
3,038,128 | + | fldB | b2895 | 0.48 | +0.8 |
3,038,149 | + | fldB | b2895 | 0.52 | -2.7 |
3,038,149 | + | fldB | b2895 | 0.52 | +0.1 |
3,038,321 | + | fldB | b2895 | 0.85 | +0.5 |
3,038,348 | - | +0.1 | |||
3,038,348 | - | -1.7 | |||
3,038,418 | - | -0.0 | |||
3,038,516 | - | ygfX | b2896 | 0.19 | +0.4 |
3,038,698 | - | ygfX | b2896 | 0.64 | +0.4 |
3,038,714 | + | ygfX | b2896 | 0.68 | +1.0 |
3,038,714 | + | ygfX | b2896 | 0.68 | +0.4 |
3,038,716 | - | ygfX | b2896 | 0.68 | -0.5 |
3,038,718 | + | ygfX | b2896 | 0.69 | -0.6 |
3,038,718 | + | ygfX | b2896 | 0.69 | -1.1 |
3,038,746 | - | ygfX | b2896 | 0.75 | -0.2 |
Or see this region's nucleotide sequence