Experiment: LB_plus_SM_buffer with Ffm_phage 0.0001875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4568 and GFF4569 are separated by 31 nucleotides GFF4569 and GFF4570 are separated by 116 nucleotides GFF4570 and GFF4571 overlap by 1 nucleotides
GFF4568 - putative cytoplasmic protein, at 354,502 to 355,740
GFF4568
GFF4569 - Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1), at 355,772 to 356,707
GFF4569
GFF4570 - Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4), at 356,824 to 357,549
GFF4570
GFF4571 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 357,549 to 358,223
GFF4571
Position (kb) 355
356
357 Strain fitness (log2 ratio) -1
0
1
2 at 354.883 kb on - strand, within GFF4568 at 354.903 kb on + strand, within GFF4568 at 355.108 kb on - strand, within GFF4568 at 355.149 kb on + strand, within GFF4568 at 355.263 kb on - strand, within GFF4568 at 355.389 kb on - strand, within GFF4568 at 355.391 kb on + strand, within GFF4568 at 355.432 kb on - strand, within GFF4568 at 355.566 kb on - strand, within GFF4568 at 355.602 kb on + strand, within GFF4568 at 355.603 kb on - strand, within GFF4568 at 355.669 kb on + strand at 355.681 kb on - strand at 355.782 kb on + strand at 355.783 kb on - strand at 355.872 kb on + strand, within GFF4569 at 355.902 kb on + strand, within GFF4569 at 356.038 kb on + strand, within GFF4569 at 356.129 kb on - strand, within GFF4569 at 356.206 kb on - strand, within GFF4569 at 356.237 kb on - strand, within GFF4569 at 356.285 kb on - strand, within GFF4569 at 356.690 kb on - strand at 356.720 kb on + strand at 356.728 kb on - strand at 356.780 kb on + strand at 356.913 kb on + strand, within GFF4570 at 357.017 kb on - strand, within GFF4570 at 357.074 kb on - strand, within GFF4570 at 357.093 kb on + strand, within GFF4570 at 357.093 kb on + strand, within GFF4570 at 357.094 kb on - strand, within GFF4570 at 357.094 kb on - strand, within GFF4570 at 357.094 kb on - strand, within GFF4570 at 357.305 kb on - strand, within GFF4570 at 357.461 kb on - strand, within GFF4570 at 357.571 kb on + strand at 357.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.0001875 MOI remove 354,883 - GFF4568 0.31 +0.6 354,903 + GFF4568 0.32 +0.0 355,108 - GFF4568 0.49 +0.5 355,149 + GFF4568 0.52 -0.0 355,263 - GFF4568 0.61 +0.4 355,389 - GFF4568 0.72 -0.1 355,391 + GFF4568 0.72 -0.4 355,432 - GFF4568 0.75 -0.1 355,566 - GFF4568 0.86 +0.1 355,602 + GFF4568 0.89 -0.8 355,603 - GFF4568 0.89 +0.3 355,669 + -0.5 355,681 - -0.2 355,782 + +0.1 355,783 - +0.1 355,872 + GFF4569 0.11 +1.1 355,902 + GFF4569 0.14 +0.0 356,038 + GFF4569 0.28 +0.5 356,129 - GFF4569 0.38 +0.4 356,206 - GFF4569 0.46 +0.4 356,237 - GFF4569 0.50 +0.7 356,285 - GFF4569 0.55 +0.3 356,690 - +0.4 356,720 + +0.9 356,728 - -1.0 356,780 + -0.2 356,913 + GFF4570 0.12 +0.4 357,017 - GFF4570 0.27 -0.9 357,074 - GFF4570 0.34 +0.4 357,093 + GFF4570 0.37 -0.4 357,093 + GFF4570 0.37 +0.5 357,094 - GFF4570 0.37 -0.0 357,094 - GFF4570 0.37 -0.5 357,094 - GFF4570 0.37 +1.8 357,305 - GFF4570 0.66 +0.6 357,461 - GFF4570 0.88 +0.7 357,571 + +0.1 357,611 - +0.8
Or see this region's nucleotide sequence