Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2335

Experiment: LB_plus_SM_buffer with Ffm_phage 0.0001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2334 and GFF2335 are separated by 320 nucleotidesGFF2335 and GFF2336 are separated by 14 nucleotidesGFF2336 and GFF2337 are separated by 98 nucleotides GFF2334 - Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9), at 123,415 to 125,904 GFF2334 GFF2335 - PTS system, fructose-specific IIC component, at 126,225 to 127,304 GFF2335 GFF2336 - PTS system fructose-like IIB component 1 precursor (EC 2.7.1.69), at 127,319 to 127,639 GFF2336 GFF2337 - Pyruvate formate-lyase (EC 2.3.1.54), at 127,738 to 130,035 GFF2337 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1at 125.291 kb on - strand, within GFF2334at 125.315 kb on - strand, within GFF2334at 125.409 kb on + strand, within GFF2334at 125.429 kb on - strand, within GFF2334at 125.545 kb on - strand, within GFF2334at 125.832 kb on + strandat 125.836 kb on - strandat 125.848 kb on + strandat 125.872 kb on + strandat 125.873 kb on - strandat 125.873 kb on - strandat 125.895 kb on + strandat 125.953 kb on - strandat 126.287 kb on + strandat 126.288 kb on - strandat 126.340 kb on + strand, within GFF2335at 126.340 kb on + strand, within GFF2335at 126.341 kb on - strand, within GFF2335at 126.341 kb on - strand, within GFF2335at 126.447 kb on + strand, within GFF2335at 126.447 kb on + strand, within GFF2335at 126.457 kb on - strand, within GFF2335at 126.580 kb on - strand, within GFF2335at 126.657 kb on - strand, within GFF2335at 126.860 kb on - strand, within GFF2335at 126.862 kb on - strand, within GFF2335at 126.862 kb on - strand, within GFF2335at 126.863 kb on + strand, within GFF2335at 126.863 kb on + strand, within GFF2335at 126.864 kb on - strand, within GFF2335at 127.062 kb on - strand, within GFF2335at 127.117 kb on - strand, within GFF2335at 127.302 kb on + strandat 127.370 kb on + strand, within GFF2336at 127.370 kb on + strand, within GFF2336at 127.370 kb on + strand, within GFF2336at 127.370 kb on + strand, within GFF2336at 127.370 kb on + strand, within GFF2336at 127.370 kb on + strand, within GFF2336at 127.370 kb on + strand, within GFF2336at 127.370 kb on + strand, within GFF2336at 127.371 kb on - strand, within GFF2336at 127.371 kb on - strand, within GFF2336at 127.422 kb on + strand, within GFF2336at 127.513 kb on + strand, within GFF2336at 127.547 kb on - strand, within GFF2336at 127.552 kb on + strand, within GFF2336at 127.600 kb on + strand, within GFF2336at 127.749 kb on + strandat 127.816 kb on + strandat 127.882 kb on + strandat 127.966 kb on - strandat 128.119 kb on - strand, within GFF2337at 128.121 kb on + strand, within GFF2337

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.0001875 MOI
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125,291 - GFF2334 0.75 -0.7
125,315 - GFF2334 0.76 +0.5
125,409 + GFF2334 0.80 -1.8
125,429 - GFF2334 0.81 -0.2
125,545 - GFF2334 0.86 +0.7
125,832 + -1.1
125,836 - -1.1
125,848 + +0.2
125,872 + +0.1
125,873 - -0.1
125,873 - -0.2
125,895 + +0.6
125,953 - +0.8
126,287 + +0.2
126,288 - -0.0
126,340 + GFF2335 0.11 -0.0
126,340 + GFF2335 0.11 +1.5
126,341 - GFF2335 0.11 -0.5
126,341 - GFF2335 0.11 +0.0
126,447 + GFF2335 0.21 -0.6
126,447 + GFF2335 0.21 -0.2
126,457 - GFF2335 0.21 -0.0
126,580 - GFF2335 0.33 +0.1
126,657 - GFF2335 0.40 +0.9
126,860 - GFF2335 0.59 -0.3
126,862 - GFF2335 0.59 +0.2
126,862 - GFF2335 0.59 -0.5
126,863 + GFF2335 0.59 +0.7
126,863 + GFF2335 0.59 +0.4
126,864 - GFF2335 0.59 +0.1
127,062 - GFF2335 0.78 +1.2
127,117 - GFF2335 0.83 -0.1
127,302 + +0.3
127,370 + GFF2336 0.16 +0.5
127,370 + GFF2336 0.16 +0.2
127,370 + GFF2336 0.16 -1.1
127,370 + GFF2336 0.16 -0.2
127,370 + GFF2336 0.16 -0.0
127,370 + GFF2336 0.16 +1.6
127,370 + GFF2336 0.16 -0.3
127,370 + GFF2336 0.16 +0.6
127,371 - GFF2336 0.16 -0.4
127,371 - GFF2336 0.16 -0.5
127,422 + GFF2336 0.32 -0.5
127,513 + GFF2336 0.60 +0.2
127,547 - GFF2336 0.71 +0.0
127,552 + GFF2336 0.73 -0.1
127,600 + GFF2336 0.88 +0.0
127,749 + +0.3
127,816 + +0.9
127,882 + +0.4
127,966 - +1.6
128,119 - GFF2337 0.17 +0.6
128,121 + GFF2337 0.17 -0.7

Or see this region's nucleotide sequence