Experiment: capsaicin 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdpA and kdpF overlap by 1 nucleotides kdpF and ybfA are separated by 312 nucleotides ybfA and rhsC are separated by 242 nucleotides
b0698: kdpA - potassium-transporting ATPase subunit A (NCBI), at 726,282 to 727,955
kdpA
b4513: kdpF - potassium ion accessory transporter subunit (NCBI), at 727,955 to 728,044
kdpF
b0699: ybfA - hypothetical protein (NCBI), at 728,357 to 728,563
ybfA
b0700: rhsC - rhsC element core protein RshC (NCBI), at 728,806 to 732,999
rhsC
Position (kb) 727
728
729 Strain fitness (log2 ratio) -1
0
1
2
3 at 726.981 kb on + strand, within kdpA at 727.062 kb on - strand, within kdpA at 727.075 kb on - strand, within kdpA at 727.075 kb on - strand, within kdpA at 727.107 kb on - strand, within kdpA at 727.325 kb on - strand, within kdpA at 727.338 kb on + strand, within kdpA at 727.338 kb on + strand, within kdpA at 727.435 kb on - strand, within kdpA at 727.464 kb on + strand, within kdpA at 727.600 kb on + strand, within kdpA at 727.600 kb on + strand, within kdpA at 727.640 kb on - strand, within kdpA at 727.687 kb on - strand, within kdpA at 727.692 kb on - strand, within kdpA at 727.696 kb on + strand, within kdpA at 727.696 kb on + strand, within kdpA at 727.696 kb on + strand, within kdpA at 727.767 kb on + strand, within kdpA at 727.792 kb on + strand at 727.871 kb on + strand at 727.871 kb on + strand at 727.884 kb on + strand at 727.904 kb on - strand at 727.904 kb on - strand at 727.963 kb on + strand at 727.966 kb on - strand at 727.988 kb on - strand, within kdpF at 728.022 kb on - strand, within kdpF at 728.054 kb on - strand at 728.054 kb on - strand at 728.059 kb on - strand at 728.068 kb on - strand at 728.076 kb on - strand at 728.580 kb on + strand at 728.597 kb on + strand at 728.641 kb on + strand at 728.641 kb on + strand at 728.758 kb on - strand at 728.810 kb on - strand at 728.840 kb on - strand at 728.863 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction capsaicin 2 mM remove 726,981 + kdpA b0698 0.42 +0.0 727,062 - kdpA b0698 0.47 -0.0 727,075 - kdpA b0698 0.47 +1.2 727,075 - kdpA b0698 0.47 -1.5 727,107 - kdpA b0698 0.49 +0.1 727,325 - kdpA b0698 0.62 -0.6 727,338 + kdpA b0698 0.63 -0.0 727,338 + kdpA b0698 0.63 +0.4 727,435 - kdpA b0698 0.69 -0.0 727,464 + kdpA b0698 0.71 -0.3 727,600 + kdpA b0698 0.79 -0.2 727,600 + kdpA b0698 0.79 -0.6 727,640 - kdpA b0698 0.81 +0.3 727,687 - kdpA b0698 0.84 -0.1 727,692 - kdpA b0698 0.84 +0.1 727,696 + kdpA b0698 0.84 +0.4 727,696 + kdpA b0698 0.84 +1.5 727,696 + kdpA b0698 0.84 +0.3 727,767 + kdpA b0698 0.89 +0.5 727,792 + -0.6 727,871 + +0.7 727,871 + +0.3 727,884 + +0.3 727,904 - -0.0 727,904 - -0.5 727,963 + -0.4 727,966 - +3.1 727,988 - kdpF b4513 0.37 -0.6 728,022 - kdpF b4513 0.74 -0.7 728,054 - +0.8 728,054 - +0.2 728,059 - -1.2 728,068 - -0.0 728,076 - +0.2 728,580 + +0.7 728,597 + -0.1 728,641 + -0.4 728,641 + +0.1 728,758 - -0.3 728,810 - -0.0 728,840 - +0.3 728,863 - +0.3
Or see this region's nucleotide sequence