Strain Fitness in Escherichia coli BW25113 around b3198

Experiment: capsaicin 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	capsaicin 2 mM
3,339,301	+				+0.7
3,339,309	-				-0.6
3,339,309	-				+0.4
3,339,309	-				+0.5
3,339,346	+				-0.5
3,339,346	+				+0.4
3,339,350	+				+0.1
3,339,417	-	kdsD	b3197	0.13	+0.3
3,339,447	+	kdsD	b3197	0.16	+0.2
3,339,516	-	kdsD	b3197	0.23	+0.4
3,339,536	+	kdsD	b3197	0.25	+0.3
3,339,579	-	kdsD	b3197	0.29	-1.5
3,339,579	-	kdsD	b3197	0.29	-1.3
3,339,584	+	kdsD	b3197	0.30	+0.3
3,339,590	-	kdsD	b3197	0.31	+0.4
3,339,596	+	kdsD	b3197	0.31	+0.2
3,339,596	+	kdsD	b3197	0.31	+1.3
3,339,604	-	kdsD	b3197	0.32	+0.5
3,339,635	-	kdsD	b3197	0.35	+1.3
3,339,649	-	kdsD	b3197	0.37	+0.7
3,339,649	-	kdsD	b3197	0.37	+0.3
3,339,719	+	kdsD	b3197	0.44	-0.6
3,339,720	-	kdsD	b3197	0.44	+0.6
3,339,720	-	kdsD	b3197	0.44	-0.0
3,339,773	+	kdsD	b3197	0.49	-0.6
3,339,773	+	kdsD	b3197	0.49	-0.0
3,339,778	-	kdsD	b3197	0.50	-1.0
3,339,778	-	kdsD	b3197	0.50	-1.7
3,339,778	-	kdsD	b3197	0.50	-0.3
3,339,791	+	kdsD	b3197	0.51	+0.3
3,339,791	+	kdsD	b3197	0.51	+0.8
3,339,829	-	kdsD	b3197	0.55	-1.0
3,339,864	+	kdsD	b3197	0.58	+0.5
3,339,868	-	kdsD	b3197	0.59	+0.1
3,339,876	+	kdsD	b3197	0.60	+0.3
3,339,879	-	kdsD	b3197	0.60	-0.4
3,339,879	-	kdsD	b3197	0.60	-0.2
3,339,924	+	kdsD	b3197	0.64	+0.5
3,339,974	+	kdsD	b3197	0.70	-0.8
3,340,032	+	kdsD	b3197	0.75	-0.0
3,340,105	-	kdsD	b3197	0.83	-1.6
3,340,129	+	kdsD	b3197	0.85	+0.9
3,340,129	+	kdsD	b3197	0.85	+0.9
3,340,203	+				+1.4
3,340,203	+				-1.0
3,340,231	+				+0.4
3,340,269	+				-0.0
3,340,326	+				-0.5
3,340,326	+				+0.4
3,340,326	+				+0.6
3,340,374	+	kdsC	b3198	0.14	-1.3
3,340,374	+	kdsC	b3198	0.14	-1.1
3,340,391	+	kdsC	b3198	0.17	-1.0
3,340,391	+	kdsC	b3198	0.17	-0.9
3,340,736	+	kdsC	b3198	0.78	-1.5
3,341,218	+	yrbK	b3199	0.62	-0.4
3,341,218	+	yrbK	b3199	0.62	-0.2
3,341,256	+	yrbK	b3199	0.69	-0.2
3,341,256	+	yrbK	b3199	0.69	+1.1
3,341,388	+				+0.9
3,341,388	+				-0.1