Strain Fitness in Escherichia coli BW25113 around b2822

Experiment: capsaicin 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	capsaicin 2 mM
2,956,082	-	ptr	b2821	0.71	-0.9
2,956,082	-	ptr	b2821	0.71	+0.1
2,956,353	-	ptr	b2821	0.81	+0.5
2,956,360	+	ptr	b2821	0.81	+0.7
2,956,362	+	ptr	b2821	0.81	-0.6
2,956,370	-	ptr	b2821	0.81	-0.1
2,956,419	-	ptr	b2821	0.83	+0.3
2,956,478	-	ptr	b2821	0.85	-0.2
2,956,478	-	ptr	b2821	0.85	-1.4
2,956,485	+	ptr	b2821	0.85	+0.4
2,956,485	+	ptr	b2821	0.85	+0.4
2,956,598	-	ptr	b2821	0.89	+0.1
2,956,607	-	ptr	b2821	0.90	+0.3
2,956,653	+				-0.9
2,956,658	-				+1.2
2,956,658	-				+0.3
2,956,663	+				-0.2
2,956,772	-				+0.1
2,956,772	-				+0.9
2,956,844	+				-0.6
2,956,882	-				+0.4
2,957,218	-				-0.7
2,957,288	+				-1.1
2,957,823	+	recC	b2822	0.22	-1.4
2,958,415	-	recC	b2822	0.40	-1.4
2,958,570	-	recC	b2822	0.44	-0.0
2,958,570	-	recC	b2822	0.44	-0.4
2,958,885	-	recC	b2822	0.54	-1.7
2,959,105	+	recC	b2822	0.60	-0.7
2,959,345	+	recC	b2822	0.67	-1.0
2,959,585	+	recC	b2822	0.74	+0.4
2,959,640	+	recC	b2822	0.76	-1.1
2,959,672	+	recC	b2822	0.77	-0.5
2,960,337	-				-1.3
2,960,370	+				-2.1
2,960,441	+				+1.0
2,960,489	+				+0.1
2,960,523	-	ppdC	b2823	0.19	-1.8
2,960,523	-	ppdC	b2823	0.19	+0.9
2,960,535	+	ppdC	b2823	0.22	+0.0
2,960,661	+	ppdC	b2823	0.61	+0.4
2,960,726	-	ppdC	b2823	0.81	+0.1
2,960,726	-	ppdC	b2823	0.81	+0.6
2,960,736	+	ppdC	b2823	0.84	+0.6
2,960,759	-				+0.7
2,960,759	-				-0.0
2,960,974	-	ygdB	b2824	0.50	-0.3
2,961,100	+	ygdB	b2824	0.81	+0.3
2,961,100	+	ygdB	b2824	0.81	+0.4
2,961,102	-	ygdB	b2824	0.81	-0.1
2,961,141	+				+0.3
2,961,173	+				+0.6
2,961,343	-	ppdB	b2825	0.30	+0.6