Strain Fitness in Escherichia coli BW25113 around b0438

Experiment: capsaicin 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	capsaicin 2 mM
455,812	-				-1.0
455,824	-				-0.4
455,827	-				+0.1
455,852	+				+0.2
455,852	+				-1.2
455,921	+				-1.6
455,958	-				-1.1
456,018	-	clpP	b0437	0.19	-0.7
456,053	-	clpP	b0437	0.24	-1.4
456,141	+	clpP	b0437	0.38	-1.2
456,142	-	clpP	b0437	0.39	-0.5
456,162	+	clpP	b0437	0.42	-0.1
456,162	-	clpP	b0437	0.42	-1.1
456,162	-	clpP	b0437	0.42	-0.5
456,168	+	clpP	b0437	0.43	-1.5
456,170	+	clpP	b0437	0.43	-0.3
456,217	-	clpP	b0437	0.51	-0.6
456,220	-	clpP	b0437	0.51	-0.6
456,222	-	clpP	b0437	0.51	-0.4
456,222	-	clpP	b0437	0.51	+0.3
456,320	-	clpP	b0437	0.67	+0.3
456,327	-	clpP	b0437	0.68	-1.4
456,345	+	clpP	b0437	0.71	-1.4
456,383	-	clpP	b0437	0.77	-0.7
456,396	+	clpP	b0437	0.79	-0.2
456,422	-	clpP	b0437	0.83	-1.0
456,429	-	clpP	b0437	0.85	-1.3
456,429	-	clpP	b0437	0.85	-0.2
456,429	-	clpP	b0437	0.85	+0.6
456,429	-	clpP	b0437	0.85	-0.2
456,439	-	clpP	b0437	0.86	-0.2
456,480	+				-0.5
456,504	+				-0.7
456,541	+				-0.1
456,610	+				+1.0
456,749	+				+0.2
456,749	+				-1.0
456,757	-				-0.1
456,918	+	clpX	b0438	0.21	-0.7
456,931	-	clpX	b0438	0.22	-1.5
456,954	-	clpX	b0438	0.24	-1.7
456,954	-	clpX	b0438	0.24	-2.3
457,003	-	clpX	b0438	0.28	-0.1
457,054	+	clpX	b0438	0.32	-1.1
457,112	+	clpX	b0438	0.36	-0.3
457,112	+	clpX	b0438	0.36	-0.4
457,120	-	clpX	b0438	0.37	-2.4
457,188	-	clpX	b0438	0.42	+0.5
457,188	-	clpX	b0438	0.42	-0.7
457,197	-	clpX	b0438	0.43	-0.0
457,238	+	clpX	b0438	0.46	-0.5
457,262	-	clpX	b0438	0.48	-0.9
457,272	+	clpX	b0438	0.49	-0.7
457,360	+	clpX	b0438	0.56	+0.0
457,360	+	clpX	b0438	0.56	-1.1
457,379	-	clpX	b0438	0.57	-0.2
457,510	+	clpX	b0438	0.67	-0.6
457,570	+	clpX	b0438	0.72	+0.7
457,570	+	clpX	b0438	0.72	-0.2
457,598	-	clpX	b0438	0.74	-1.0
457,719	-	clpX	b0438	0.84	+0.1
457,778	-	clpX	b0438	0.88	+0.3
457,779	+	clpX	b0438	0.89	-1.3
457,779	+	clpX	b0438	0.89	+0.4
457,792	-	clpX	b0438	0.90	-0.3
457,902	-				-0.4
458,022	+				+0.4
458,030	-				+1.2
458,060	-				-0.2
458,095	+				-0.5
458,095	+				-0.4
458,095	+				+0.3
458,119	-				-0.7
458,156	-				+0.5
458,171	+				+0.1
458,338	+				+1.5
458,399	-	lon	b0439	0.12	-0.4
458,399	-	lon	b0439	0.12	-0.5
458,399	-	lon	b0439	0.12	-0.4
458,418	+	lon	b0439	0.13	-1.2
458,418	-	lon	b0439	0.13	-0.4
458,418	-	lon	b0439	0.13	-0.7
458,426	-	lon	b0439	0.13	+1.1
458,443	-	lon	b0439	0.14	-0.2
458,486	+	lon	b0439	0.16	-0.1
458,494	-	lon	b0439	0.16	-0.6
458,582	-	lon	b0439	0.20	+0.1
458,685	+	lon	b0439	0.24	-1.4
458,805	-	lon	b0439	0.29	-1.1