Experiment: capsaicin 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yadE and panD are separated by 3 nucleotides panD and yadD are separated by 273 nucleotides
b0130: yadE - predicted polysaccharide deacetylase lipoprotein (NCBI), at 145,081 to 146,310
yadE
b0131: panD - aspartate 1-decarboxylase precursor (NCBI), at 146,314 to 146,694
panD
b0132: yadD - predicted transposase (NCBI), at 146,968 to 147,870
yadD
Position (kb) 146
147 Strain fitness (log2 ratio) -1
0
1 at 145.325 kb on + strand, within yadE at 145.355 kb on + strand, within yadE at 145.362 kb on - strand, within yadE at 145.362 kb on - strand, within yadE at 145.518 kb on - strand, within yadE at 145.530 kb on + strand, within yadE at 145.549 kb on + strand, within yadE at 145.584 kb on - strand, within yadE at 145.584 kb on - strand, within yadE at 145.594 kb on + strand, within yadE at 145.594 kb on + strand, within yadE at 145.732 kb on - strand, within yadE at 145.810 kb on - strand, within yadE at 145.811 kb on - strand, within yadE at 145.873 kb on - strand, within yadE at 145.945 kb on - strand, within yadE at 145.945 kb on - strand, within yadE at 146.033 kb on + strand, within yadE at 146.034 kb on - strand, within yadE at 146.083 kb on + strand, within yadE at 146.142 kb on + strand, within yadE at 146.142 kb on + strand, within yadE at 146.153 kb on - strand, within yadE at 146.153 kb on - strand, within yadE at 146.275 kb on + strand at 146.275 kb on + strand at 146.277 kb on + strand at 146.277 kb on + strand at 146.461 kb on + strand, within panD at 146.513 kb on - strand, within panD at 146.602 kb on + strand, within panD at 146.627 kb on + strand, within panD at 146.632 kb on + strand, within panD at 146.791 kb on - strand at 146.901 kb on - strand at 146.901 kb on - strand at 146.917 kb on - strand at 146.964 kb on + strand at 146.979 kb on + strand at 146.979 kb on + strand at 146.982 kb on - strand at 146.985 kb on - strand at 147.127 kb on - strand, within yadD at 147.127 kb on - strand, within yadD at 147.127 kb on - strand, within yadD at 147.139 kb on - strand, within yadD at 147.154 kb on - strand, within yadD at 147.154 kb on - strand, within yadD at 147.164 kb on - strand, within yadD at 147.175 kb on - strand, within yadD at 147.268 kb on + strand, within yadD at 147.268 kb on + strand, within yadD at 147.278 kb on + strand, within yadD at 147.417 kb on - strand, within yadD at 147.436 kb on + strand, within yadD at 147.451 kb on - strand, within yadD at 147.466 kb on + strand, within yadD at 147.524 kb on + strand, within yadD at 147.524 kb on + strand, within yadD at 147.544 kb on - strand, within yadD at 147.558 kb on + strand, within yadD at 147.576 kb on - strand, within yadD at 147.631 kb on - strand, within yadD at 147.631 kb on - strand, within yadD at 147.663 kb on - strand, within yadD at 147.663 kb on - strand, within yadD at 147.665 kb on - strand, within yadD at 147.687 kb on - strand, within yadD
Per-strain Table
Position Strand Gene LocusTag Fraction capsaicin 2 mM remove 145,325 + yadE b0130 0.20 +0.1 145,355 + yadE b0130 0.22 -0.3 145,362 - yadE b0130 0.23 +0.6 145,362 - yadE b0130 0.23 +0.3 145,518 - yadE b0130 0.36 -0.0 145,530 + yadE b0130 0.37 +0.2 145,549 + yadE b0130 0.38 +0.3 145,584 - yadE b0130 0.41 -0.1 145,584 - yadE b0130 0.41 -0.5 145,594 + yadE b0130 0.42 +0.6 145,594 + yadE b0130 0.42 -0.1 145,732 - yadE b0130 0.53 +0.2 145,810 - yadE b0130 0.59 -0.2 145,811 - yadE b0130 0.59 +0.9 145,873 - yadE b0130 0.64 +0.5 145,945 - yadE b0130 0.70 +0.4 145,945 - yadE b0130 0.70 -0.0 146,033 + yadE b0130 0.77 +0.7 146,034 - yadE b0130 0.77 +0.5 146,083 + yadE b0130 0.81 -0.4 146,142 + yadE b0130 0.86 +0.9 146,142 + yadE b0130 0.86 +0.8 146,153 - yadE b0130 0.87 +0.7 146,153 - yadE b0130 0.87 +0.2 146,275 + +1.2 146,275 + +1.0 146,277 + +0.6 146,277 + +0.2 146,461 + panD b0131 0.39 -0.2 146,513 - panD b0131 0.52 -0.7 146,602 + panD b0131 0.76 -0.0 146,627 + panD b0131 0.82 -0.2 146,632 + panD b0131 0.83 +0.2 146,791 - +0.9 146,901 - +0.5 146,901 - +0.0 146,917 - +0.5 146,964 + -0.7 146,979 + +0.9 146,979 + -0.1 146,982 - +0.4 146,985 - +0.4 147,127 - yadD b0132 0.18 +0.9 147,127 - yadD b0132 0.18 +0.8 147,127 - yadD b0132 0.18 -0.4 147,139 - yadD b0132 0.19 +0.7 147,154 - yadD b0132 0.21 +0.8 147,154 - yadD b0132 0.21 +0.1 147,164 - yadD b0132 0.22 +0.0 147,175 - yadD b0132 0.23 -0.8 147,268 + yadD b0132 0.33 +0.2 147,268 + yadD b0132 0.33 +0.0 147,278 + yadD b0132 0.34 -0.3 147,417 - yadD b0132 0.50 -0.2 147,436 + yadD b0132 0.52 -0.1 147,451 - yadD b0132 0.53 +0.9 147,466 + yadD b0132 0.55 -0.1 147,524 + yadD b0132 0.62 -0.0 147,524 + yadD b0132 0.62 -0.5 147,544 - yadD b0132 0.64 -1.0 147,558 + yadD b0132 0.65 +0.1 147,576 - yadD b0132 0.67 +0.1 147,631 - yadD b0132 0.73 +0.6 147,631 - yadD b0132 0.73 +0.1 147,663 - yadD b0132 0.77 -0.2 147,663 - yadD b0132 0.77 -0.1 147,665 - yadD b0132 0.77 -0.3 147,687 - yadD b0132 0.80 -0.3
Or see this region's nucleotide sequence