Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3692

Experiment: LB_plus_SM_buffer with Ffm_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3690 and GFF3691 overlap by 4 nucleotidesGFF3691 and GFF3692 are separated by 98 nucleotidesGFF3692 and GFF3693 are separated by 72 nucleotidesGFF3693 and GFF3694 are separated by 13 nucleotides GFF3690 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 44,680 to 45,141 GFF3690 GFF3691 - FIG01047584: hypothetical protein, at 45,138 to 45,359 GFF3691 GFF3692 - Threonine dehydratase (EC 4.3.1.19), at 45,458 to 46,672 GFF3692 GFF3693 - FIG01045169: hypothetical protein, at 46,745 to 46,903 GFF3693 GFF3694 - Putative ion:amino acid symporter, at 46,917 to 48,353 GFF3694 Position (kb) 45 46 47Strain fitness (log2 ratio) -1 0 1at 44.846 kb on + strand, within GFF3690at 44.846 kb on + strand, within GFF3690at 44.847 kb on - strand, within GFF3690at 44.847 kb on - strand, within GFF3690at 44.847 kb on - strand, within GFF3690at 45.880 kb on - strand, within GFF3692at 45.975 kb on - strand, within GFF3692at 46.088 kb on + strand, within GFF3692at 46.441 kb on + strand, within GFF3692at 47.670 kb on + strand, within GFF3694

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.001875 MOI
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44,846 + GFF3690 0.36 -0.7
44,846 + GFF3690 0.36 -0.2
44,847 - GFF3690 0.36 -0.5
44,847 - GFF3690 0.36 -0.3
44,847 - GFF3690 0.36 -0.6
45,880 - GFF3692 0.35 +0.5
45,975 - GFF3692 0.43 -1.0
46,088 + GFF3692 0.52 +0.1
46,441 + GFF3692 0.81 -0.3
47,670 + GFF3694 0.52 -0.1

Or see this region's nucleotide sequence