Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2160

Experiment: LB_plus_SM_buffer with Ffm_phage 0.001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2159 and GFF2160 are separated by 160 nucleotidesGFF2160 and GFF2161 are separated by 69 nucleotides GFF2159 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 3,956 to 5,305 GFF2159 GFF2160 - 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11, at 5,466 to 6,932 GFF2160 GFF2161 - GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2), at 7,002 to 8,579 GFF2161 Position (kb) 5 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5.435 kb on - strandat 5.438 kb on + strandat 5.438 kb on + strandat 5.458 kb on + strandat 5.470 kb on + strandat 5.475 kb on - strandat 5.475 kb on - strandat 5.589 kb on - strandat 5.594 kb on + strandat 6.084 kb on - strand, within GFF2160at 6.196 kb on + strand, within GFF2160at 6.263 kb on + strand, within GFF2160at 6.380 kb on + strand, within GFF2160at 6.595 kb on - strand, within GFF2160at 7.246 kb on + strand, within GFF2161at 7.310 kb on + strand, within GFF2161at 7.926 kb on - strand, within GFF2161

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.001875 MOI
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5,435 - -0.6
5,438 + +0.4
5,438 + -0.1
5,458 + +0.4
5,470 + +1.4
5,475 - -0.4
5,475 - +0.4
5,589 - +0.6
5,594 + -0.6
6,084 - GFF2160 0.42 -2.2
6,196 + GFF2160 0.50 +2.6
6,263 + GFF2160 0.54 -1.1
6,380 + GFF2160 0.62 +0.4
6,595 - GFF2160 0.77 -2.9
7,246 + GFF2161 0.15 +0.4
7,310 + GFF2161 0.20 +0.0
7,926 - GFF2161 0.59 -0.2

Or see this region's nucleotide sequence