Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21475 and CA264_21480 are separated by 198 nucleotides CA264_21480 and CA264_21485 are separated by 577 nucleotides
CA264_21475: CA264_21475 - hypothetical protein, at 162,408 to 162,995
_21475
CA264_21480: CA264_21480 - hypothetical protein, at 163,194 to 163,901
_21480
CA264_21485: CA264_21485 - hypothetical protein, at 164,479 to 165,753
_21485
Position (kb) 163
164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 162.283 kb on - strand at 162.283 kb on - strand at 162.323 kb on - strand at 162.364 kb on - strand at 162.474 kb on - strand, within CA264_21475 at 162.474 kb on - strand, within CA264_21475 at 162.514 kb on + strand, within CA264_21475 at 162.514 kb on + strand, within CA264_21475 at 162.529 kb on + strand, within CA264_21475 at 162.530 kb on - strand, within CA264_21475 at 162.533 kb on + strand, within CA264_21475 at 162.544 kb on + strand, within CA264_21475 at 162.545 kb on - strand, within CA264_21475 at 162.577 kb on + strand, within CA264_21475 at 162.578 kb on - strand, within CA264_21475 at 162.626 kb on - strand, within CA264_21475 at 162.637 kb on + strand, within CA264_21475 at 162.638 kb on - strand, within CA264_21475 at 162.638 kb on - strand, within CA264_21475 at 162.652 kb on + strand, within CA264_21475 at 162.652 kb on + strand, within CA264_21475 at 162.652 kb on + strand, within CA264_21475 at 162.652 kb on + strand, within CA264_21475 at 162.652 kb on + strand, within CA264_21475 at 162.653 kb on - strand, within CA264_21475 at 162.661 kb on + strand, within CA264_21475 at 162.662 kb on - strand, within CA264_21475 at 162.667 kb on + strand, within CA264_21475 at 162.667 kb on + strand, within CA264_21475 at 162.667 kb on + strand, within CA264_21475 at 162.672 kb on + strand, within CA264_21475 at 162.673 kb on - strand, within CA264_21475 at 162.711 kb on - strand, within CA264_21475 at 162.711 kb on - strand, within CA264_21475 at 162.714 kb on + strand, within CA264_21475 at 162.714 kb on + strand, within CA264_21475 at 162.714 kb on + strand, within CA264_21475 at 162.714 kb on + strand, within CA264_21475 at 162.715 kb on - strand, within CA264_21475 at 162.715 kb on - strand, within CA264_21475 at 162.715 kb on - strand, within CA264_21475 at 162.715 kb on - strand, within CA264_21475 at 162.742 kb on - strand, within CA264_21475 at 162.742 kb on - strand, within CA264_21475 at 162.755 kb on + strand, within CA264_21475 at 162.788 kb on - strand, within CA264_21475 at 162.796 kb on - strand, within CA264_21475 at 162.837 kb on - strand, within CA264_21475 at 162.841 kb on - strand, within CA264_21475 at 162.877 kb on + strand, within CA264_21475 at 162.882 kb on + strand, within CA264_21475 at 162.883 kb on - strand, within CA264_21475 at 162.883 kb on - strand, within CA264_21475 at 162.946 kb on - strand at 162.988 kb on + strand at 162.988 kb on + strand at 162.989 kb on - strand at 162.989 kb on - strand at 162.989 kb on - strand at 163.004 kb on + strand at 163.019 kb on + strand at 163.020 kb on - strand at 163.051 kb on + strand at 163.067 kb on - strand at 163.071 kb on + strand at 163.104 kb on - strand at 163.123 kb on + strand at 163.124 kb on - strand at 163.124 kb on - strand at 163.128 kb on - strand at 163.128 kb on - strand at 163.128 kb on - strand at 163.129 kb on + strand at 163.130 kb on - strand at 163.130 kb on - strand at 163.170 kb on - strand at 163.170 kb on - strand at 163.170 kb on - strand at 163.214 kb on - strand at 163.219 kb on + strand at 163.219 kb on + strand at 163.219 kb on + strand at 163.220 kb on - strand at 163.220 kb on - strand at 163.220 kb on - strand at 163.240 kb on + strand at 163.313 kb on - strand, within CA264_21480 at 163.493 kb on + strand, within CA264_21480 at 163.503 kb on - strand, within CA264_21480 at 163.602 kb on + strand, within CA264_21480 at 163.614 kb on - strand, within CA264_21480 at 163.617 kb on + strand, within CA264_21480 at 163.618 kb on - strand, within CA264_21480 at 163.618 kb on - strand, within CA264_21480 at 163.618 kb on - strand, within CA264_21480 at 163.702 kb on - strand, within CA264_21480 at 163.705 kb on + strand, within CA264_21480 at 163.706 kb on - strand, within CA264_21480 at 163.751 kb on + strand, within CA264_21480 at 163.787 kb on - strand, within CA264_21480 at 163.831 kb on - strand at 163.940 kb on + strand at 163.956 kb on + strand at 163.957 kb on - strand at 163.960 kb on + strand at 163.960 kb on + strand at 164.004 kb on - strand at 164.012 kb on + strand at 164.019 kb on + strand at 164.027 kb on - strand at 164.027 kb on - strand at 164.027 kb on - strand at 164.092 kb on - strand at 164.092 kb on - strand at 164.145 kb on - strand at 164.149 kb on - strand at 164.149 kb on - strand at 164.155 kb on + strand at 164.156 kb on - strand at 164.175 kb on - strand at 164.186 kb on - strand at 164.191 kb on - strand at 164.191 kb on - strand at 164.193 kb on + strand at 164.225 kb on - strand at 164.225 kb on - strand at 164.317 kb on - strand at 164.406 kb on + strand at 164.458 kb on + strand at 164.458 kb on + strand at 164.482 kb on + strand at 164.482 kb on + strand at 164.516 kb on + strand at 164.516 kb on + strand at 164.558 kb on - strand at 164.558 kb on - strand at 164.559 kb on + strand at 164.559 kb on + strand at 164.592 kb on - strand at 164.592 kb on - strand at 164.592 kb on - strand at 164.772 kb on - strand, within CA264_21485 at 164.834 kb on + strand, within CA264_21485 at 164.835 kb on - strand, within CA264_21485 at 164.876 kb on + strand, within CA264_21485
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 162,283 - -1.5 162,283 - -0.5 162,323 - +0.2 162,364 - -0.0 162,474 - CA264_21475 0.11 -0.5 162,474 - CA264_21475 0.11 +0.5 162,514 + CA264_21475 0.18 +0.4 162,514 + CA264_21475 0.18 -0.8 162,529 + CA264_21475 0.21 +0.3 162,530 - CA264_21475 0.21 -0.1 162,533 + CA264_21475 0.21 +0.4 162,544 + CA264_21475 0.23 +2.5 162,545 - CA264_21475 0.23 +0.2 162,577 + CA264_21475 0.29 -0.5 162,578 - CA264_21475 0.29 -0.5 162,626 - CA264_21475 0.37 -1.4 162,637 + CA264_21475 0.39 +0.0 162,638 - CA264_21475 0.39 -2.2 162,638 - CA264_21475 0.39 +0.4 162,652 + CA264_21475 0.41 -0.6 162,652 + CA264_21475 0.41 -0.8 162,652 + CA264_21475 0.41 -0.3 162,652 + CA264_21475 0.41 -1.2 162,652 + CA264_21475 0.41 -0.3 162,653 - CA264_21475 0.42 -0.7 162,661 + CA264_21475 0.43 -0.3 162,662 - CA264_21475 0.43 -0.0 162,667 + CA264_21475 0.44 -0.1 162,667 + CA264_21475 0.44 -0.1 162,667 + CA264_21475 0.44 -0.3 162,672 + CA264_21475 0.45 -0.3 162,673 - CA264_21475 0.45 +0.0 162,711 - CA264_21475 0.52 -1.4 162,711 - CA264_21475 0.52 -0.2 162,714 + CA264_21475 0.52 +0.2 162,714 + CA264_21475 0.52 -0.5 162,714 + CA264_21475 0.52 -0.0 162,714 + CA264_21475 0.52 -1.0 162,715 - CA264_21475 0.52 -0.1 162,715 - CA264_21475 0.52 +0.4 162,715 - CA264_21475 0.52 -0.1 162,715 - CA264_21475 0.52 +0.2 162,742 - CA264_21475 0.57 -0.1 162,742 - CA264_21475 0.57 +0.4 162,755 + CA264_21475 0.59 -0.4 162,788 - CA264_21475 0.65 +0.3 162,796 - CA264_21475 0.66 -0.5 162,837 - CA264_21475 0.73 -2.5 162,841 - CA264_21475 0.74 -0.6 162,877 + CA264_21475 0.80 +0.2 162,882 + CA264_21475 0.81 -2.2 162,883 - CA264_21475 0.81 -0.0 162,883 - CA264_21475 0.81 +0.1 162,946 - -0.0 162,988 + +0.8 162,988 + -0.4 162,989 - -1.9 162,989 - +1.1 162,989 - +0.4 163,004 + -0.8 163,019 + +0.2 163,020 - -0.9 163,051 + -0.6 163,067 - -0.3 163,071 + -0.2 163,104 - -0.8 163,123 + -0.7 163,124 - +1.0 163,124 - -0.2 163,128 - -1.4 163,128 - -0.2 163,128 - -0.3 163,129 + -1.9 163,130 - -0.4 163,130 - -1.3 163,170 - +0.0 163,170 - -0.6 163,170 - +0.9 163,214 - +1.7 163,219 + -0.0 163,219 + +0.6 163,219 + +0.6 163,220 - -0.0 163,220 - -0.4 163,220 - +0.0 163,240 + +0.8 163,313 - CA264_21480 0.17 +0.1 163,493 + CA264_21480 0.42 +0.7 163,503 - CA264_21480 0.44 -0.3 163,602 + CA264_21480 0.58 -0.4 163,614 - CA264_21480 0.59 -0.2 163,617 + CA264_21480 0.60 -0.0 163,618 - CA264_21480 0.60 -0.5 163,618 - CA264_21480 0.60 -0.4 163,618 - CA264_21480 0.60 +0.2 163,702 - CA264_21480 0.72 -0.4 163,705 + CA264_21480 0.72 +0.2 163,706 - CA264_21480 0.72 -0.6 163,751 + CA264_21480 0.79 +1.7 163,787 - CA264_21480 0.84 -0.7 163,831 - -0.0 163,940 + -0.6 163,956 + +0.1 163,957 - +0.5 163,960 + -0.6 163,960 + -0.2 164,004 - -1.6 164,012 + -0.4 164,019 + -1.0 164,027 - -0.3 164,027 - -0.6 164,027 - +0.0 164,092 - +0.5 164,092 - +0.6 164,145 - -0.0 164,149 - -0.8 164,149 - +0.3 164,155 + -0.1 164,156 - -1.7 164,175 - +0.8 164,186 - -0.5 164,191 - -0.2 164,191 - +0.2 164,193 + -1.0 164,225 - -0.1 164,225 - +0.5 164,317 - +1.0 164,406 + +0.4 164,458 + +0.5 164,458 + +2.0 164,482 + -0.7 164,482 + +1.7 164,516 + -1.4 164,516 + -0.2 164,558 - +1.0 164,558 - -0.1 164,559 + -0.3 164,559 + -0.6 164,592 - +0.0 164,592 - +0.2 164,592 - -0.4 164,772 - CA264_21485 0.23 -0.6 164,834 + CA264_21485 0.28 -0.7 164,835 - CA264_21485 0.28 +0.1 164,876 + CA264_21485 0.31 +0.3
Or see this region's nucleotide sequence