Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21460 and CA264_21465 are separated by 148 nucleotides CA264_21465 and CA264_21470 are separated by 110 nucleotides CA264_21470 and CA264_21475 are separated by 910 nucleotides
CA264_21460: CA264_21460 - hypothetical protein, at 158,939 to 160,138
_21460
CA264_21465: CA264_21465 - hypothetical protein, at 160,287 to 160,754
_21465
CA264_21470: CA264_21470 - hypothetical protein, at 160,865 to 161,497
_21470
CA264_21475: CA264_21475 - hypothetical protein, at 162,408 to 162,995
_21475
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.021 kb on - strand at 160.021 kb on - strand at 160.063 kb on - strand at 160.273 kb on - strand at 160.273 kb on - strand at 160.306 kb on - strand at 160.308 kb on - strand at 160.367 kb on - strand, within CA264_21465 at 160.503 kb on - strand, within CA264_21465 at 160.619 kb on - strand, within CA264_21465 at 160.709 kb on - strand at 160.908 kb on + strand at 160.965 kb on + strand, within CA264_21470 at 160.966 kb on - strand, within CA264_21470 at 161.085 kb on + strand, within CA264_21470 at 161.086 kb on - strand, within CA264_21470 at 161.086 kb on - strand, within CA264_21470 at 161.086 kb on - strand, within CA264_21470 at 161.093 kb on + strand, within CA264_21470 at 161.093 kb on + strand, within CA264_21470 at 161.176 kb on + strand, within CA264_21470 at 161.182 kb on - strand, within CA264_21470 at 161.187 kb on + strand, within CA264_21470 at 161.188 kb on - strand, within CA264_21470 at 161.188 kb on - strand, within CA264_21470 at 161.188 kb on - strand, within CA264_21470 at 161.272 kb on + strand, within CA264_21470 at 161.366 kb on + strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.367 kb on - strand, within CA264_21470 at 161.408 kb on + strand, within CA264_21470 at 161.408 kb on + strand, within CA264_21470 at 161.444 kb on + strand at 161.445 kb on - strand at 161.491 kb on + strand at 161.496 kb on - strand at 161.503 kb on - strand at 161.518 kb on + strand at 161.518 kb on + strand at 161.519 kb on - strand at 161.519 kb on - strand at 161.519 kb on - strand at 161.522 kb on + strand at 161.538 kb on - strand at 161.538 kb on - strand at 161.570 kb on - strand at 161.576 kb on + strand at 161.583 kb on - strand at 161.656 kb on - strand at 161.658 kb on + strand at 161.658 kb on + strand at 161.680 kb on + strand at 161.684 kb on + strand at 161.684 kb on + strand at 161.721 kb on + strand at 161.746 kb on - strand at 161.757 kb on + strand at 161.778 kb on - strand at 161.801 kb on - strand at 161.801 kb on - strand at 161.820 kb on + strand at 161.908 kb on - strand at 161.908 kb on - strand at 161.908 kb on - strand at 162.005 kb on + strand at 162.005 kb on + strand at 162.010 kb on + strand at 162.011 kb on - strand at 162.011 kb on - strand at 162.021 kb on - strand at 162.091 kb on + strand at 162.101 kb on + strand at 162.102 kb on - strand at 162.104 kb on + strand at 162.283 kb on - strand at 162.283 kb on - strand at 162.323 kb on - strand at 162.364 kb on - strand at 162.474 kb on - strand, within CA264_21475 at 162.474 kb on - strand, within CA264_21475
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 160,021 - +2.0 160,021 - -1.0 160,063 - -0.6 160,273 - +1.0 160,273 - +1.0 160,306 - -0.7 160,308 - +0.2 160,367 - CA264_21465 0.17 -0.9 160,503 - CA264_21465 0.46 -1.2 160,619 - CA264_21465 0.71 -1.9 160,709 - -0.6 160,908 + -0.6 160,965 + CA264_21470 0.16 -1.0 160,966 - CA264_21470 0.16 -0.9 161,085 + CA264_21470 0.35 +0.5 161,086 - CA264_21470 0.35 -0.2 161,086 - CA264_21470 0.35 +2.0 161,086 - CA264_21470 0.35 -1.0 161,093 + CA264_21470 0.36 -0.9 161,093 + CA264_21470 0.36 -1.2 161,176 + CA264_21470 0.49 -0.3 161,182 - CA264_21470 0.50 -0.4 161,187 + CA264_21470 0.51 +0.8 161,188 - CA264_21470 0.51 -0.0 161,188 - CA264_21470 0.51 +0.3 161,188 - CA264_21470 0.51 -0.1 161,272 + CA264_21470 0.64 -1.4 161,366 + CA264_21470 0.79 +1.9 161,367 - CA264_21470 0.79 -1.0 161,367 - CA264_21470 0.79 +0.1 161,367 - CA264_21470 0.79 -0.3 161,367 - CA264_21470 0.79 -0.6 161,367 - CA264_21470 0.79 -0.2 161,367 - CA264_21470 0.79 -0.0 161,367 - CA264_21470 0.79 -0.6 161,408 + CA264_21470 0.86 +0.1 161,408 + CA264_21470 0.86 -0.0 161,444 + -2.0 161,445 - -0.1 161,491 + -1.4 161,496 - +0.3 161,503 - +0.4 161,518 + -1.0 161,518 + -1.0 161,519 - -1.8 161,519 - +1.0 161,519 - -0.0 161,522 + -0.6 161,538 - -0.1 161,538 - +0.5 161,570 - -0.0 161,576 + +0.7 161,583 - +0.6 161,656 - +0.6 161,658 + +1.0 161,658 + +1.0 161,680 + -0.2 161,684 + +0.4 161,684 + +0.2 161,721 + -0.2 161,746 - +0.3 161,757 + -0.8 161,778 - -0.2 161,801 - +0.1 161,801 - -0.3 161,820 + -0.2 161,908 - -0.3 161,908 - +0.4 161,908 - -0.6 162,005 + -0.5 162,005 + -1.4 162,010 + +0.4 162,011 - -0.2 162,011 - -1.2 162,021 - -0.5 162,091 + -0.6 162,101 + -1.0 162,102 - +0.2 162,104 + -0.4 162,283 - -1.5 162,283 - -0.5 162,323 - +0.2 162,364 - -0.0 162,474 - CA264_21475 0.11 -0.5 162,474 - CA264_21475 0.11 +0.5
Or see this region's nucleotide sequence