Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13940

Experiment: marine_broth_2216 with nitrite 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 with nitrite 20 mM
3,254,399	-		CA264_13935	0.44	-0.4
3,254,434	-		CA264_13935	0.46	-0.1
3,254,451	+		CA264_13935	0.47	+2.3
3,254,593	+		CA264_13935	0.55	-1.2
3,254,594	-		CA264_13935	0.56	-0.0
3,254,669	+		CA264_13935	0.60	-0.3
3,254,670	-		CA264_13935	0.60	-0.3
3,254,670	-		CA264_13935	0.60	-0.5
3,254,676	+		CA264_13935	0.60	-0.2
3,254,679	+		CA264_13935	0.60	-0.3
3,254,680	-		CA264_13935	0.61	-0.5
3,254,680	-		CA264_13935	0.61	-0.3
3,254,694	+		CA264_13935	0.61	+1.2
3,254,694	+		CA264_13935	0.61	-0.6
3,254,694	+		CA264_13935	0.61	-0.5
3,254,694	+		CA264_13935	0.61	+1.5
3,254,695	-		CA264_13935	0.61	-0.7
3,254,695	-		CA264_13935	0.61	+0.3
3,254,695	-		CA264_13935	0.61	-0.5
3,254,695	-		CA264_13935	0.61	-0.2
3,254,695	-		CA264_13935	0.61	-0.0
3,254,697	-		CA264_13935	0.62	+0.0
3,254,697	-		CA264_13935	0.62	-1.9
3,254,738	+		CA264_13935	0.64	-0.5
3,254,738	+		CA264_13935	0.64	+0.1
3,254,739	-		CA264_13935	0.64	+0.3
3,254,750	+		CA264_13935	0.65	+0.1
3,254,771	+		CA264_13935	0.66	-0.4
3,254,789	-		CA264_13935	0.67	+0.2
3,254,816	-		CA264_13935	0.68	-0.4
3,254,816	-		CA264_13935	0.68	-0.4
3,254,872	-		CA264_13935	0.72	-0.4
3,254,872	-		CA264_13935	0.72	-0.6
3,254,909	+		CA264_13935	0.74	+0.3
3,255,015	+		CA264_13935	0.80	+0.6
3,255,015	+		CA264_13935	0.80	-1.3
3,255,155	-		CA264_13935	0.88	-0.4
3,255,195	+				-0.1
3,255,214	+				+0.1
3,255,218	+				-0.3
3,255,219	-				+0.6
3,255,220	+				-0.9
3,255,220	+				-1.1
3,255,220	+				-0.9
3,255,220	+				-0.0
3,255,220	+				-0.1
3,255,220	+				-0.8
3,255,220	+				+0.7
3,255,220	+				-0.2
3,255,220	+				+0.1
3,255,221	-				-3.4
3,255,221	-				+1.4
3,255,221	-				+1.1
3,255,221	-				-0.3
3,255,234	+				+1.1
3,255,368	-				-1.7
3,255,369	+				+0.3
3,255,394	+				-0.9
3,255,394	+				-0.8
3,255,395	-				+0.6
3,255,395	-				-0.7
3,255,448	+				+0.1
3,255,449	-				-2.1
3,255,452	+				-0.1
3,255,452	+				-0.1
3,255,452	+				-1.5
3,255,453	-				+0.1
3,255,525	+				-1.0
3,255,525	+				-0.7
3,255,526	-				-0.3
3,255,581	+				-0.7
3,255,582	-				-0.7
3,255,691	+		CA264_13940	0.10	-0.7
3,255,691	+		CA264_13940	0.10	-0.3
3,255,691	+		CA264_13940	0.10	-1.1
3,255,692	-		CA264_13940	0.10	+0.7
3,255,692	-		CA264_13940	0.10	-0.1
3,255,696	-		CA264_13940	0.10	-1.8
3,255,714	+		CA264_13940	0.11	-0.5
3,255,727	-		CA264_13940	0.11	-1.5
3,255,758	-		CA264_13940	0.12	+0.2
3,255,880	-		CA264_13940	0.16	+1.1
3,255,880	-		CA264_13940	0.16	-1.3
3,255,912	+		CA264_13940	0.18	+0.8
3,255,913	-		CA264_13940	0.18	-0.1
3,255,916	+		CA264_13940	0.18	-0.6
3,255,917	-		CA264_13940	0.18	-1.1
3,255,931	-		CA264_13940	0.18	-0.0
3,255,979	-		CA264_13940	0.20	-1.7
3,255,979	-		CA264_13940	0.20	+1.1
3,255,987	+		CA264_13940	0.20	+0.5
3,256,019	+		CA264_13940	0.21	+0.2
3,256,020	-		CA264_13940	0.21	-0.1
3,256,022	+		CA264_13940	0.21	+0.6
3,256,143	+		CA264_13940	0.25	-0.8
3,256,144	-		CA264_13940	0.25	-0.1
3,256,150	+		CA264_13940	0.26	+0.9
3,256,150	+		CA264_13940	0.26	+2.7
3,256,151	-		CA264_13940	0.26	+0.3
3,256,151	-		CA264_13940	0.26	+0.7
3,256,154	+		CA264_13940	0.26	+0.9
3,256,190	-		CA264_13940	0.27	-0.4
3,256,192	+		CA264_13940	0.27	-0.6
3,256,215	+		CA264_13940	0.28	-0.5
3,256,272	+		CA264_13940	0.30	-0.6
3,256,272	+		CA264_13940	0.30	-0.1
3,256,273	-		CA264_13940	0.30	-0.3
3,256,329	+		CA264_13940	0.32	-0.5
3,256,330	-		CA264_13940	0.32	+1.1
3,256,358	+		CA264_13940	0.33	+0.1
3,256,358	+		CA264_13940	0.33	+0.8
3,256,358	+		CA264_13940	0.33	+0.1
3,256,359	-		CA264_13940	0.33	-0.2
3,256,359	-		CA264_13940	0.33	-1.1
3,256,360	+		CA264_13940	0.33	+0.5
3,256,360	+		CA264_13940	0.33	-0.2
3,256,364	+		CA264_13940	0.33	-0.0
3,256,365	-		CA264_13940	0.33	-0.6
3,256,365	-		CA264_13940	0.33	-0.7
3,256,444	-		CA264_13940	0.36	-0.5
3,256,470	-		CA264_13940	0.36	+0.3
3,256,537	-		CA264_13940	0.39	-0.5
3,256,588	+		CA264_13940	0.40	-0.1
3,256,588	+		CA264_13940	0.40	-0.1
3,256,588	+		CA264_13940	0.40	+0.2
3,256,588	+		CA264_13940	0.40	-0.3
3,256,598	+		CA264_13940	0.41	-0.1
3,256,598	+		CA264_13940	0.41	-0.5
3,256,598	+		CA264_13940	0.41	+0.7
3,256,691	+		CA264_13940	0.44	+1.2
3,256,691	+		CA264_13940	0.44	-1.0
3,256,699	+		CA264_13940	0.44	-0.6
3,256,740	-		CA264_13940	0.46	+4.1
3,256,741	+		CA264_13940	0.46	-0.2
3,256,750	+		CA264_13940	0.46	+0.7
3,256,750	+		CA264_13940	0.46	-0.8
3,256,751	-		CA264_13940	0.46	-0.1
3,256,751	-		CA264_13940	0.46	-0.5
3,256,754	+		CA264_13940	0.46	+0.7
3,256,758	+		CA264_13940	0.46	-0.4
3,256,783	+		CA264_13940	0.47	-0.4
3,256,783	+		CA264_13940	0.47	+0.1
3,256,783	+		CA264_13940	0.47	-0.3
3,256,783	+		CA264_13940	0.47	+0.3
3,256,783	+		CA264_13940	0.47	+0.4
3,256,784	-		CA264_13940	0.47	+0.1
3,256,823	-		CA264_13940	0.48	-0.9
3,256,907	+		CA264_13940	0.51	-1.2
3,256,937	+		CA264_13940	0.52	-0.3
3,256,977	-		CA264_13940	0.54	-0.8
3,256,977	-		CA264_13940	0.54	-0.2
3,257,006	+		CA264_13940	0.55	+0.0
3,257,008	+		CA264_13940	0.55	+0.1
3,257,008	+		CA264_13940	0.55	-0.1
3,257,009	-		CA264_13940	0.55	+0.0
3,257,025	+		CA264_13940	0.55	-1.2
3,257,026	-		CA264_13940	0.55	-0.5
3,257,026	-		CA264_13940	0.55	-0.7
3,257,044	+		CA264_13940	0.56	-0.5
3,257,045	-		CA264_13940	0.56	-0.5
3,257,045	-		CA264_13940	0.56	-0.3
3,257,045	-		CA264_13940	0.56	+0.2
3,257,111	+		CA264_13940	0.58	+0.2
3,257,133	+		CA264_13940	0.59	-0.1
3,257,134	-		CA264_13940	0.59	-0.1
3,257,134	-		CA264_13940	0.59	-0.6
3,257,134	-		CA264_13940	0.59	-0.7
3,257,134	-		CA264_13940	0.59	-0.3
3,257,164	+		CA264_13940	0.60	+0.4
3,257,164	+		CA264_13940	0.60	-0.2
3,257,165	-		CA264_13940	0.60	+0.8
3,257,185	+		CA264_13940	0.61	-1.6
3,257,185	+		CA264_13940	0.61	-1.7
3,257,185	+		CA264_13940	0.61	-0.4
3,257,230	-		CA264_13940	0.62	+0.0
3,257,259	+		CA264_13940	0.63	+1.7
3,257,364	+		CA264_13940	0.67	-0.4
3,257,399	+		CA264_13940	0.68	+0.0
3,257,400	-		CA264_13940	0.68	-0.0
3,257,410	+		CA264_13940	0.68	-0.5
3,257,411	-		CA264_13940	0.68	-0.3
3,257,480	+		CA264_13940	0.71	+0.3
3,257,481	-		CA264_13940	0.71	+0.3
3,257,490	+		CA264_13940	0.71	+0.2
3,257,522	+		CA264_13940	0.72	-0.0
3,257,556	-		CA264_13940	0.73	+0.1
3,257,566	-		CA264_13940	0.73	-0.5
3,257,569	+		CA264_13940	0.74	+0.3
3,257,570	-		CA264_13940	0.74	+0.4
3,257,570	-		CA264_13940	0.74	+0.8
3,257,590	-		CA264_13940	0.74	+0.1
3,257,612	-		CA264_13940	0.75	+0.2
3,257,618	+		CA264_13940	0.75	-1.5
3,257,681	+		CA264_13940	0.77	-0.5
3,257,682	-		CA264_13940	0.77	-0.3
3,257,741	-		CA264_13940	0.79	+1.1
3,257,741	-		CA264_13940	0.79	-1.2
3,257,782	+		CA264_13940	0.81	+0.1
3,257,794	-		CA264_13940	0.81	-0.8
3,257,818	+		CA264_13940	0.82	-1.1
3,257,818	+		CA264_13940	0.82	-0.5
3,257,818	+		CA264_13940	0.82	-2.6
3,257,819	-		CA264_13940	0.82	+0.1
3,257,819	-		CA264_13940	0.82	+0.1
3,257,819	-		CA264_13940	0.82	+0.5
3,257,895	+		CA264_13940	0.85	+0.0
3,257,895	+		CA264_13940	0.85	-1.2
3,257,895	+		CA264_13940	0.85	-0.1
3,257,899	-		CA264_13940	0.85	-0.4
3,257,954	+		CA264_13940	0.87	+1.1
3,257,962	-		CA264_13940	0.87	+0.0
3,257,969	+		CA264_13940	0.87	-0.5
3,257,997	-		CA264_13940	0.88	-0.9
3,258,004	-		CA264_13940	0.88	-0.2
3,258,004	-		CA264_13940	0.88	+1.1
3,258,006	+		CA264_13940	0.88	-0.6
3,258,006	+		CA264_13940	0.88	-0.6
3,258,007	-		CA264_13940	0.88	-0.8
3,258,009	+		CA264_13940	0.88	-1.2
3,258,039	+		CA264_13940	0.89	-0.8
3,258,075	+				+0.3
3,258,076	-				+1.1
3,258,087	+				-0.3
3,258,087	+				+0.5
3,258,096	-				+0.6
3,258,109	-				-0.3
3,258,136	+				+3.1
3,258,136	+				-0.5
3,258,185	+				+0.2
3,258,185	+				+2.1
3,258,185	+				+1.3
3,258,185	+				-0.6
3,258,202	+				-0.2
3,258,202	+				-0.2
3,258,202	+				+0.1
3,258,202	+				-0.2
3,258,203	-				-0.5
3,258,203	-				-0.8
3,258,207	-				-1.5
3,258,267	+				-0.5
3,258,275	-				-0.5
3,258,275	-				-0.5
3,258,320	+				-0.2
3,258,326	+				-1.7
3,258,329	+				+0.3
3,258,330	-				-2.0
3,258,330	-				+1.1
3,258,343	+				-0.1
3,258,343	+				-0.9
3,258,351	-				-0.1
3,258,364	+				-0.9
3,258,385	+				+0.0
3,258,409	+				-0.5
3,258,448	-				+0.4
3,258,532	+				-0.9
3,258,533	-				-0.6
3,258,533	-				-0.5
3,258,655	+		CA264_13945	0.19	+0.4
3,258,655	+		CA264_13945	0.19	+1.0
3,258,655	+		CA264_13945	0.19	+0.1
3,258,656	-		CA264_13945	0.19	+1.1
3,258,656	-		CA264_13945	0.19	-0.4
3,258,656	-		CA264_13945	0.19	-0.3
3,258,656	-		CA264_13945	0.19	+0.7
3,258,695	+		CA264_13945	0.22	-0.3
3,258,696	-		CA264_13945	0.22	-0.4
3,258,699	+		CA264_13945	0.22	+0.1
3,258,700	-		CA264_13945	0.22	-1.2
3,258,700	-		CA264_13945	0.22	-0.8
3,258,700	-		CA264_13945	0.22	-1.2
3,258,702	+		CA264_13945	0.23	-0.2
3,258,702	+		CA264_13945	0.23	+0.2
3,258,703	-		CA264_13945	0.23	-0.5
3,258,723	-		CA264_13945	0.24	-0.4
3,258,723	-		CA264_13945	0.24	-0.7
3,258,731	+		CA264_13945	0.25	+0.8
3,258,732	-		CA264_13945	0.25	-0.4
3,258,746	+		CA264_13945	0.26	+1.3
3,258,746	+		CA264_13945	0.26	+0.6
3,258,826	+		CA264_13945	0.32	+0.5
3,258,874	+		CA264_13945	0.36	+0.6
3,258,877	-		CA264_13945	0.36	+0.3
3,258,877	-		CA264_13945	0.36	-0.6
3,258,877	-		CA264_13945	0.36	-0.4
3,258,877	-		CA264_13945	0.36	-0.6
3,258,877	-		CA264_13945	0.36	+1.9
3,258,923	+		CA264_13945	0.39	-0.9
3,258,929	+		CA264_13945	0.40	-0.7
3,258,929	+		CA264_13945	0.40	+1.7
3,258,930	-		CA264_13945	0.40	-2.2
3,258,962	-		CA264_13945	0.42	-1.0
3,259,096	+		CA264_13945	0.53	-0.3
3,259,097	-		CA264_13945	0.53	-1.2
3,259,138	+		CA264_13945	0.56	+1.0
3,259,138	+		CA264_13945	0.56	-0.5
3,259,138	+		CA264_13945	0.56	-1.7
3,259,139	-		CA264_13945	0.56	+0.1
3,259,211	-		CA264_13945	0.62	-0.5
3,259,215	-		CA264_13945	0.62	+0.2