Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13265

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13255 and CA264_13260 are separated by 12 nucleotidesCA264_13260 and CA264_13265 are separated by 108 nucleotidesCA264_13265 and CA264_13270 are separated by 123 nucleotides CA264_13255: CA264_13255 - DNA-directed RNA polymerase subunit omega, at 3,087,756 to 3,088,085 _13255 CA264_13260: CA264_13260 - outer membrane protein assembly factor BamD, at 3,088,098 to 3,088,892 _13260 CA264_13265: CA264_13265 - hypothetical protein, at 3,089,001 to 3,090,620 _13265 CA264_13270: CA264_13270 - tRNA lysidine(34) synthetase TilS, at 3,090,744 to 3,092,075 _13270 Position (kb) 3089 3090 3091Strain fitness (log2 ratio) -2 -1 0 1at 3088.089 kb on + strandat 3088.092 kb on + strandat 3088.181 kb on - strand, within CA264_13260at 3088.936 kb on + strandat 3089.100 kb on - strandat 3090.700 kb on - strandat 3090.743 kb on + strandat 3090.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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3,088,089 + -2.0
3,088,092 + +1.0
3,088,181 - CA264_13260 0.10 +1.3
3,088,936 + +0.3
3,089,100 - -0.3
3,090,700 - +0.5
3,090,743 + -0.4
3,090,744 - +1.4

Or see this region's nucleotide sequence