Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07250

Experiment: marine_broth_2216 with nitrite 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 with nitrite 20 mM
1,671,417	+				+0.9
1,671,472	+				-1.4
1,671,472	+				-0.1
1,671,473	-				-2.4
1,671,501	+				-3.1
1,671,588	+				+0.9
1,671,589	-				-0.1
1,671,644	+				+2.1
1,671,644	+				+2.1
1,671,760	-		CA264_07245	0.17	+3.8
1,671,793	-		CA264_07245	0.22	+3.3
1,671,793	-		CA264_07245	0.22	+3.1
1,671,877	-		CA264_07245	0.37	+3.0
1,671,900	-		CA264_07245	0.41	+2.4
1,671,915	+		CA264_07245	0.44	+3.5
1,671,951	+		CA264_07245	0.50	+2.6
1,672,109	+		CA264_07245	0.78	+3.3
1,672,134	-		CA264_07245	0.83	+3.4
1,672,143	-		CA264_07245	0.84	+3.1
1,672,189	+				+3.1
1,672,292	-				+1.5
1,672,297	-				+0.9
1,672,318	-				+1.2
1,672,327	+				-0.4
1,672,418	+				-1.4
1,672,419	-				+1.6
1,672,420	+				+0.3
1,672,421	-				+1.3
1,672,423	+				+0.3
1,672,423	+				+0.2
1,672,423	+				+1.5
1,672,423	+				+0.7
1,672,459	-				+1.4
1,672,462	+				+1.5
1,672,462	+				+0.1
1,672,462	+				+0.1
1,672,462	+				+0.1
1,672,462	+				+0.7
1,672,462	+				+0.5
1,672,462	+				+0.1
1,672,462	+				+0.6
1,672,463	-				+0.7
1,672,463	-				+1.4
1,672,463	-				+1.4
1,672,464	+				-0.8
1,672,464	+				+0.6
1,672,605	+		CA264_07250	0.10	-0.5
1,672,605	+		CA264_07250	0.10	-0.3
1,672,606	-		CA264_07250	0.10	+0.9
1,672,665	+		CA264_07250	0.12	-0.1
1,672,665	+		CA264_07250	0.12	+0.6
1,672,665	+		CA264_07250	0.12	+0.3
1,672,666	-		CA264_07250	0.12	+2.5
1,672,668	+		CA264_07250	0.12	+0.4
1,672,668	+		CA264_07250	0.12	-0.1
1,672,668	+		CA264_07250	0.12	-0.5
1,672,669	-		CA264_07250	0.13	+1.0
1,672,669	-		CA264_07250	0.13	+1.3
1,672,669	-		CA264_07250	0.13	+1.2
1,672,669	-		CA264_07250	0.13	+0.3
1,672,669	-		CA264_07250	0.13	+0.9
1,672,716	+		CA264_07250	0.14	+0.3
1,672,719	+		CA264_07250	0.15	+0.9
1,672,720	-		CA264_07250	0.15	+0.1
1,672,720	-		CA264_07250	0.15	+0.9
1,672,797	+		CA264_07250	0.18	-0.3
1,672,798	-		CA264_07250	0.18	+2.2
1,672,798	-		CA264_07250	0.18	+1.3
1,672,800	-		CA264_07250	0.18	+0.2
1,672,878	+		CA264_07250	0.21	-0.2
1,672,902	+		CA264_07250	0.22	+1.2
1,672,998	+		CA264_07250	0.26	+0.8
1,672,998	+		CA264_07250	0.26	+1.1
1,672,999	-		CA264_07250	0.26	+2.0
1,673,005	+		CA264_07250	0.26	-0.6
1,673,064	-		CA264_07250	0.28	+0.8
1,673,065	+		CA264_07250	0.28	+2.0
1,673,093	+		CA264_07250	0.29	-0.2
1,673,093	+		CA264_07250	0.29	-0.7
1,673,093	+		CA264_07250	0.29	-0.6
1,673,095	+		CA264_07250	0.29	-0.4
1,673,118	-		CA264_07250	0.30	-0.1
1,673,306	-		CA264_07250	0.38	+0.7
1,673,348	-		CA264_07250	0.39	+1.0
1,673,376	+		CA264_07250	0.41	-0.7
1,673,386	+		CA264_07250	0.41	+0.4
1,673,422	-		CA264_07250	0.42	+2.2
1,673,423	+		CA264_07250	0.42	+1.0
1,673,438	+		CA264_07250	0.43	+0.3
1,673,450	+		CA264_07250	0.44	-2.0
1,673,450	+		CA264_07250	0.44	-0.1
1,673,479	+		CA264_07250	0.45	-0.5
1,673,530	-		CA264_07250	0.47	+0.7
1,673,603	-		CA264_07250	0.50	+1.4
1,673,605	+		CA264_07250	0.50	+0.2
1,673,606	-		CA264_07250	0.50	+1.0
1,673,725	+		CA264_07250	0.54	-0.5
1,673,725	+		CA264_07250	0.54	-0.4
1,673,726	-		CA264_07250	0.54	-0.7
1,673,726	-		CA264_07250	0.54	+1.6
1,673,790	-		CA264_07250	0.57	+1.0
1,673,832	-		CA264_07250	0.59	+0.1
1,673,834	+		CA264_07250	0.59	+0.2
1,673,835	-		CA264_07250	0.59	-0.5
1,673,862	+		CA264_07250	0.60	-0.6
1,673,862	+		CA264_07250	0.60	-0.3
1,673,864	+		CA264_07250	0.60	+0.1
1,673,865	-		CA264_07250	0.60	+0.2
1,673,926	+		CA264_07250	0.62	-1.0
1,673,926	+		CA264_07250	0.62	+0.2
1,673,927	-		CA264_07250	0.62	-0.4
1,673,932	+		CA264_07250	0.63	+2.0
1,673,932	+		CA264_07250	0.63	+0.2
1,673,932	+		CA264_07250	0.63	-0.2
1,674,015	+		CA264_07250	0.66	-1.4
1,674,015	+		CA264_07250	0.66	+0.1
1,674,087	-		CA264_07250	0.69	-0.5
1,674,100	-		CA264_07250	0.69	-0.7
1,674,100	-		CA264_07250	0.69	-0.5
1,674,100	-		CA264_07250	0.69	-0.5
1,674,152	+		CA264_07250	0.71	+1.0
1,674,193	+		CA264_07250	0.73	-0.0
1,674,194	-		CA264_07250	0.73	-0.6
1,674,200	+		CA264_07250	0.73	+0.8
1,674,201	-		CA264_07250	0.73	-0.3
1,674,315	+		CA264_07250	0.78	-0.3
1,674,315	+		CA264_07250	0.78	-1.3
1,674,329	-		CA264_07250	0.78	-0.9
1,674,334	+		CA264_07250	0.79	+1.4
1,674,379	+		CA264_07250	0.80	-0.6
1,674,380	-		CA264_07250	0.80	+0.1
1,674,444	-		CA264_07250	0.83	-0.4
1,674,618	+		CA264_07250	0.90	-0.3
1,674,619	-		CA264_07250	0.90	-0.2
1,674,619	-		CA264_07250	0.90	+0.1
1,674,622	+				+0.3
1,674,657	-				+0.1
1,674,716	+				-0.1
1,674,744	-				+0.1
1,674,751	+				-0.1
1,674,751	+				-1.6
1,674,752	-				-1.4
1,674,752	-				+0.2
1,674,808	+				+0.3
1,674,809	-				-0.3
1,674,811	-				+0.6
1,674,816	+				-0.1
1,674,816	+				-0.4
1,674,817	-				-0.8
1,674,843	+				+0.4
1,674,843	+				-0.1
1,674,844	-				-0.5
1,674,856	+				+0.1
1,674,857	-				+0.9
1,674,889	-				+0.4
1,674,913	+				-1.1
1,674,913	+				-0.3
1,674,914	-				+0.0
1,674,914	-				+0.7
1,674,915	+				+0.1
1,674,946	+				-0.5
1,674,946	+				+1.5
1,674,947	-				+0.5
1,674,949	-				-0.4
1,674,958	-				-0.4
1,675,040	+		CA264_07255	0.12	-0.4
1,675,075	+		CA264_07255	0.18	-0.8
1,675,104	+		CA264_07255	0.23	+0.9
1,675,104	+		CA264_07255	0.23	-0.2
1,675,104	+		CA264_07255	0.23	-1.1
1,675,104	+		CA264_07255	0.23	-0.4
1,675,104	+		CA264_07255	0.23	-0.6
1,675,105	-		CA264_07255	0.23	+0.4
1,675,105	-		CA264_07255	0.23	+0.1
1,675,178	+		CA264_07255	0.34	+0.5
1,675,183	-		CA264_07255	0.35	-0.1
1,675,188	+		CA264_07255	0.36	+0.6
1,675,283	+		CA264_07255	0.51	+1.5
1,675,283	+		CA264_07255	0.51	-0.6
1,675,283	+		CA264_07255	0.51	-0.3
1,675,332	+		CA264_07255	0.59	+0.2
1,675,333	-		CA264_07255	0.59	-0.8
1,675,333	-		CA264_07255	0.59	+0.1
1,675,333	-		CA264_07255	0.59	-0.3
1,675,358	-		CA264_07255	0.63	-1.1
1,675,358	-		CA264_07255	0.63	-0.3
1,675,358	-		CA264_07255	0.63	-0.6
1,675,537	+				+0.1
1,675,537	+				+0.1
1,675,537	+				-0.4
1,675,562	+				-0.4
1,675,562	+				+0.1
1,675,661	+				+0.2
1,675,676	+				-0.5
1,675,677	-				-0.3
1,675,677	-				+0.9
1,675,682	+				-0.3
1,675,682	+				-0.7
1,675,683	-				+0.1
1,675,683	-				+0.1
1,675,691	-				-0.4
1,675,693	-				-0.2
1,675,693	-				-0.5
1,675,704	-				+0.1
1,675,762	+				+0.8
1,675,763	-				+1.3
1,675,763	-				-0.0
1,675,767	-				-0.3
1,675,799	+				-0.2
1,675,799	+				+0.7
1,675,800	-				-1.4
1,675,800	-				-0.5
1,675,801	+				+1.4
1,675,802	-				-1.2
1,675,802	-				-0.7
1,675,840	-				-0.6
1,675,849	-				+0.1