Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06725

Experiment: marine_broth_2216 with nitrite 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine_broth_2216 with nitrite 20 mM
1,553,420	-		CA264_06720	0.44	-1.2
1,553,453	+		CA264_06720	0.46	+0.4
1,553,453	+		CA264_06720	0.46	+0.1
1,553,479	+		CA264_06720	0.48	+1.4
1,553,480	-				-1.6
1,553,487	+		CA264_06720	0.48	-1.6
1,553,490	+		CA264_06720	0.48	+0.8
1,553,490	+		CA264_06720	0.48	-0.4
1,553,658	-		CA264_06720	0.58	-0.9
1,553,668	+		CA264_06720	0.59	-1.3
1,553,683	-		CA264_06720	0.59	-0.4
1,553,746	+		CA264_06720	0.63	+0.5
1,553,746	+		CA264_06720	0.63	-0.4
1,553,747	-		CA264_06720	0.63	+1.0
1,553,767	+		CA264_06720	0.64	+1.2
1,553,767	+		CA264_06720	0.64	-0.2
1,553,804	-		CA264_06720	0.66	-0.7
1,553,852	+		CA264_06720	0.69	-0.0
1,553,852	+		CA264_06720	0.69	-0.1
1,553,854	+		CA264_06720	0.69	-0.6
1,553,854	+		CA264_06720	0.69	+1.0
1,553,854	+		CA264_06720	0.69	-0.1
1,553,854	+		CA264_06720	0.69	+0.6
1,553,911	+		CA264_06720	0.73	-0.8
1,553,912	-		CA264_06720	0.73	+0.1
1,553,912	-		CA264_06720	0.73	-1.0
1,553,912	-		CA264_06720	0.73	-0.1
1,553,992	+		CA264_06720	0.77	+1.5
1,553,993	-		CA264_06720	0.77	-0.4
1,554,022	+		CA264_06720	0.79	-1.1
1,554,059	-		CA264_06720	0.81	+1.5
1,554,059	-		CA264_06720	0.81	+0.1
1,554,077	+		CA264_06720	0.82	+0.1
1,554,078	-		CA264_06720	0.82	+0.6
1,554,078	-		CA264_06720	0.82	-0.2
1,554,202	+		CA264_06720	0.89	-0.2
1,554,202	+		CA264_06720	0.89	-0.3
1,554,202	+		CA264_06720	0.89	-0.5
1,554,203	-		CA264_06720	0.89	-1.3
1,554,368	+				-0.0
1,554,368	+				+0.4
1,554,368	+				-0.3
1,554,368	+				-0.0
1,554,368	+				+0.1
1,554,368	+				-0.8
1,554,368	+				-0.1
1,554,369	-				-0.8
1,554,369	-				-0.8
1,554,369	-				-0.8
1,554,369	-				-0.1
1,554,373	+				+0.6
1,554,374	-				-1.0
1,554,393	+				-0.1
1,554,393	+				-1.0
1,554,394	-				-1.7
1,554,427	+				-0.3
1,554,504	+				+0.7
1,554,587	+				+0.1
1,554,588	-				-1.4
1,554,643	+				-0.3
1,554,693	+				+0.6
1,554,801	-		CA264_06725	0.11	+0.0
1,554,824	+		CA264_06725	0.12	-1.7
1,554,828	+		CA264_06725	0.12	+0.2
1,554,840	+		CA264_06725	0.12	+0.1
1,554,841	-		CA264_06725	0.12	+0.1
1,554,853	-		CA264_06725	0.13	-1.0
1,555,022	+		CA264_06725	0.17	+0.1
1,555,050	+		CA264_06725	0.18	-1.0
1,555,051	-		CA264_06725	0.18	-1.0
1,555,117	-		CA264_06725	0.20	-0.8
1,555,199	+		CA264_06725	0.23	-0.0
1,555,243	-		CA264_06725	0.24	-2.0
1,555,243	-		CA264_06725	0.24	+1.2
1,555,292	-		CA264_06725	0.25	+0.2
1,555,357	+		CA264_06725	0.27	+0.2
1,555,357	+		CA264_06725	0.27	-0.6
1,555,359	+		CA264_06725	0.27	+0.3
1,555,458	+		CA264_06725	0.30	-0.0
1,555,458	+		CA264_06725	0.30	+0.5
1,555,458	+		CA264_06725	0.30	-1.0
1,555,459	-		CA264_06725	0.30	-0.2
1,555,459	-		CA264_06725	0.30	+0.1
1,555,483	-		CA264_06725	0.31	+0.2
1,555,643	-		CA264_06725	0.35	+0.3
1,555,699	-		CA264_06725	0.37	+1.0
1,555,715	+		CA264_06725	0.37	-0.7
1,555,715	+		CA264_06725	0.37	+1.3
1,555,729	+		CA264_06725	0.38	+0.5
1,555,730	-		CA264_06725	0.38	-2.7
1,555,738	+		CA264_06725	0.38	+0.1
1,555,739	-		CA264_06725	0.38	+0.5
1,555,861	-		CA264_06725	0.41	+0.4
1,555,861	-		CA264_06725	0.41	-1.4
1,555,861	-		CA264_06725	0.41	-0.5
1,555,872	+		CA264_06725	0.42	-0.1
1,555,872	+		CA264_06725	0.42	+0.3
1,555,873	-		CA264_06725	0.42	-0.6
1,555,882	+		CA264_06725	0.42	-0.0
1,555,882	+		CA264_06725	0.42	-0.7
1,555,882	+		CA264_06725	0.42	+0.5
1,555,883	-		CA264_06725	0.42	+0.1
1,555,883	-		CA264_06725	0.42	-0.5
1,555,914	-		CA264_06725	0.43	-0.7
1,556,109	+		CA264_06725	0.49	-1.1
1,556,109	+		CA264_06725	0.49	+1.0
1,556,109	+		CA264_06725	0.49	-0.3
1,556,109	+		CA264_06725	0.49	+1.0
1,556,109	+		CA264_06725	0.49	+0.3
1,556,110	-		CA264_06725	0.49	+0.8
1,556,112	+		CA264_06725	0.49	-0.9
1,556,112	+		CA264_06725	0.49	-0.3
1,556,205	+		CA264_06725	0.51	+0.1
1,556,238	+		CA264_06725	0.52	+2.0
1,556,248	+		CA264_06725	0.53	+0.1
1,556,297	-		CA264_06725	0.54	-0.5
1,556,534	-		CA264_06725	0.61	+0.7
1,556,633	+		CA264_06725	0.64	-0.8
1,556,700	+		CA264_06725	0.65	-0.1
1,556,700	+		CA264_06725	0.65	-0.2
1,556,706	+		CA264_06725	0.66	+0.4
1,556,707	-		CA264_06725	0.66	-1.0
1,556,722	-		CA264_06725	0.66	+0.7
1,556,722	-		CA264_06725	0.66	-0.1
1,556,733	+		CA264_06725	0.66	-1.6
1,556,734	-		CA264_06725	0.66	-0.6
1,556,734	-		CA264_06725	0.66	-0.6
1,556,743	+		CA264_06725	0.67	+0.2
1,556,750	+		CA264_06725	0.67	-0.4
1,556,768	+		CA264_06725	0.67	-0.0
1,556,880	+		CA264_06725	0.71	+1.0
1,556,880	+		CA264_06725	0.71	+0.4
1,556,880	+		CA264_06725	0.71	-0.3
1,556,880	+		CA264_06725	0.71	-0.4
1,556,895	+		CA264_06725	0.71	+0.1
1,556,896	-		CA264_06725	0.71	-0.6
1,557,056	+		CA264_06725	0.76	-1.8
1,557,139	+		CA264_06725	0.78	-1.4
1,557,200	+		CA264_06725	0.80	-0.4
1,557,201	-		CA264_06725	0.80	-0.5
1,557,324	-		CA264_06725	0.83	-1.8
1,557,352	+		CA264_06725	0.84	-0.6
1,557,376	+		CA264_06725	0.85	-0.7
1,557,377	-		CA264_06725	0.85	+0.0
1,557,440	-		CA264_06725	0.87	-1.2
1,557,570	-				-0.5
1,557,623	-				+0.4
1,557,699	-				-0.8
1,557,699	-				+0.7
1,557,745	-				-0.9
1,557,745	-				-1.8
1,557,823	+				-0.1
1,557,858	+				-0.0
1,557,859	-				+0.5
1,557,910	-				-0.5
1,557,944	+				+0.3
1,557,945	-				-0.6
1,557,945	-				-0.4
1,557,947	+				-0.3
1,557,947	+				+0.0
1,557,949	+				+1.0
1,557,949	+				-0.4
1,557,980	+				-1.7
1,557,985	-				-0.6
1,557,989	+				-0.2
1,557,989	+				-1.5
1,557,989	+				-0.2
1,558,001	+				-0.5
1,558,012	+				-0.3
1,558,170	-				+1.4
1,558,373	+		CA264_06730	0.24	+0.0
1,558,373	+		CA264_06730	0.24	-1.6
1,558,376	-		CA264_06730	0.24	+1.7
1,558,399	+		CA264_06730	0.26	-0.7
1,558,400	-		CA264_06730	0.26	+1.3
1,558,400	-		CA264_06730	0.26	+1.0
1,558,559	-		CA264_06730	0.39	-0.4
1,558,562	+		CA264_06730	0.39	-0.5
1,558,636	+		CA264_06730	0.46	+0.1
1,558,637	-		CA264_06730	0.46	+0.7
1,558,656	-		CA264_06730	0.47	-0.6
1,558,787	+		CA264_06730	0.58	-0.4
1,558,806	-		CA264_06730	0.60	-0.4
1,558,887	-		CA264_06730	0.66	-0.8