Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04250 and CA264_04255 are separated by 16 nucleotides CA264_04255 and CA264_04260 are separated by 238 nucleotides CA264_04260 and CA264_04265 are separated by 274 nucleotides CA264_04265 and CA264_04270 are separated by 53 nucleotides
CA264_04250: CA264_04250 - NADH oxidoreductase (quinone) subunit F, at 982,438 to 983,739
_04250
CA264_04255: CA264_04255 - NADH-quinone oxidoreductase subunit E, at 983,756 to 984,220
_04255
CA264_04260: CA264_04260 - NADH-quinone oxidoreductase subunit C/D, at 984,459 to 986,207
_04260
CA264_04265: CA264_04265 - NADH-quinone oxidoreductase subunit B, at 986,482 to 987,120
_04265
CA264_04270: CA264_04270 - NADH:ubiquinone oxidoreductase subunit A, at 987,174 to 987,605
_04270
Position (kb) 984
985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2 at 983.614 kb on + strand at 983.632 kb on - strand at 983.668 kb on + strand at 983.669 kb on - strand at 983.761 kb on + strand at 983.762 kb on - strand at 983.763 kb on + strand at 983.763 kb on + strand at 983.808 kb on + strand, within CA264_04255 at 983.913 kb on - strand, within CA264_04255 at 983.913 kb on - strand, within CA264_04255 at 983.928 kb on + strand, within CA264_04255 at 983.928 kb on + strand, within CA264_04255 at 983.929 kb on - strand, within CA264_04255 at 983.929 kb on - strand, within CA264_04255 at 983.984 kb on + strand, within CA264_04255 at 983.985 kb on - strand, within CA264_04255 at 983.985 kb on - strand, within CA264_04255 at 984.030 kb on + strand, within CA264_04255 at 984.068 kb on - strand, within CA264_04255 at 984.068 kb on - strand, within CA264_04255 at 984.146 kb on + strand, within CA264_04255 at 984.147 kb on - strand, within CA264_04255 at 984.179 kb on + strand at 984.180 kb on - strand at 984.236 kb on - strand at 984.246 kb on + strand at 984.262 kb on + strand at 984.336 kb on - strand at 984.355 kb on + strand at 984.357 kb on + strand at 984.357 kb on + strand at 984.358 kb on - strand at 984.358 kb on - strand at 984.376 kb on + strand at 984.376 kb on + strand at 984.427 kb on + strand at 984.428 kb on - strand at 984.431 kb on - strand at 984.450 kb on + strand at 984.450 kb on + strand at 984.501 kb on + strand at 984.502 kb on - strand at 984.502 kb on - strand at 984.504 kb on - strand at 984.537 kb on + strand at 984.538 kb on - strand at 984.541 kb on + strand at 984.542 kb on - strand at 984.623 kb on - strand at 984.625 kb on + strand at 984.626 kb on - strand at 984.784 kb on + strand, within CA264_04260 at 984.820 kb on - strand, within CA264_04260 at 984.822 kb on + strand, within CA264_04260 at 984.823 kb on - strand, within CA264_04260 at 984.823 kb on - strand, within CA264_04260 at 984.823 kb on - strand, within CA264_04260 at 984.824 kb on + strand, within CA264_04260 at 984.825 kb on - strand, within CA264_04260 at 984.825 kb on - strand, within CA264_04260 at 984.825 kb on - strand, within CA264_04260 at 984.856 kb on - strand, within CA264_04260 at 985.102 kb on + strand, within CA264_04260 at 985.247 kb on - strand, within CA264_04260 at 985.410 kb on - strand, within CA264_04260 at 985.456 kb on + strand, within CA264_04260 at 985.456 kb on + strand, within CA264_04260 at 985.456 kb on + strand, within CA264_04260 at 985.457 kb on - strand, within CA264_04260 at 985.457 kb on - strand, within CA264_04260 at 985.513 kb on - strand, within CA264_04260 at 985.534 kb on - strand, within CA264_04260 at 985.534 kb on - strand, within CA264_04260 at 985.662 kb on - strand, within CA264_04260 at 985.792 kb on + strand, within CA264_04260 at 985.834 kb on + strand, within CA264_04260 at 985.835 kb on - strand, within CA264_04260 at 985.850 kb on - strand, within CA264_04260 at 985.960 kb on + strand, within CA264_04260 at 985.961 kb on - strand, within CA264_04260 at 985.961 kb on - strand, within CA264_04260 at 985.961 kb on - strand, within CA264_04260 at 985.961 kb on - strand, within CA264_04260 at 985.961 kb on - strand, within CA264_04260 at 985.965 kb on - strand, within CA264_04260 at 985.970 kb on + strand, within CA264_04260 at 985.971 kb on - strand, within CA264_04260 at 985.971 kb on - strand, within CA264_04260 at 986.035 kb on + strand at 986.232 kb on - strand at 986.234 kb on + strand at 986.234 kb on + strand at 986.234 kb on + strand at 986.235 kb on - strand at 986.235 kb on - strand at 986.235 kb on - strand at 986.235 kb on - strand at 986.239 kb on + strand at 986.240 kb on - strand at 986.240 kb on - strand at 986.348 kb on + strand at 986.349 kb on - strand at 986.387 kb on + strand at 986.388 kb on - strand at 986.388 kb on - strand at 986.389 kb on + strand at 986.389 kb on + strand at 986.390 kb on - strand at 986.393 kb on + strand at 986.394 kb on - strand at 986.461 kb on + strand at 986.462 kb on - strand at 986.463 kb on + strand at 986.463 kb on + strand at 986.464 kb on - strand at 986.464 kb on - strand at 986.464 kb on - strand at 986.471 kb on + strand at 986.472 kb on - strand at 986.483 kb on + strand at 986.483 kb on + strand at 986.483 kb on + strand at 986.484 kb on - strand at 986.484 kb on - strand at 986.484 kb on - strand at 986.484 kb on - strand at 986.684 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.734 kb on - strand, within CA264_04265 at 986.832 kb on + strand, within CA264_04265 at 986.887 kb on + strand, within CA264_04265 at 986.919 kb on - strand, within CA264_04265 at 987.059 kb on + strand at 987.135 kb on - strand at 987.146 kb on - strand at 987.164 kb on - strand at 987.164 kb on - strand at 987.164 kb on - strand at 987.166 kb on - strand at 987.166 kb on - strand at 987.168 kb on + strand at 987.168 kb on + strand at 987.169 kb on - strand at 987.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 983,614 + +1.0 983,632 - -1.5 983,668 + +1.0 983,669 - -0.1 983,761 + -0.3 983,762 - -0.5 983,763 + -0.2 983,763 + -1.3 983,808 + CA264_04255 0.11 -0.1 983,913 - CA264_04255 0.34 +0.1 983,913 - CA264_04255 0.34 -1.0 983,928 + CA264_04255 0.37 -0.2 983,928 + CA264_04255 0.37 -0.6 983,929 - CA264_04255 0.37 +0.2 983,929 - CA264_04255 0.37 +0.6 983,984 + CA264_04255 0.49 -0.5 983,985 - CA264_04255 0.49 +0.5 983,985 - CA264_04255 0.49 -1.8 984,030 + CA264_04255 0.59 +1.4 984,068 - CA264_04255 0.67 -0.2 984,068 - CA264_04255 0.67 +0.0 984,146 + CA264_04255 0.84 +0.7 984,147 - CA264_04255 0.84 +0.6 984,179 + -0.5 984,180 - -1.0 984,236 - +0.6 984,246 + -1.4 984,262 + +0.6 984,336 - -0.2 984,355 + +0.1 984,357 + +0.6 984,357 + +0.2 984,358 - -0.0 984,358 - +0.2 984,376 + -1.1 984,376 + +0.1 984,427 + -0.0 984,428 - -1.3 984,431 - -1.4 984,450 + -0.2 984,450 + -0.3 984,501 + +2.5 984,502 - -0.6 984,502 - -0.4 984,504 - +0.2 984,537 + -1.6 984,538 - +0.1 984,541 + -0.4 984,542 - +0.5 984,623 - +0.7 984,625 + -1.0 984,626 - -0.3 984,784 + CA264_04260 0.19 -0.5 984,820 - CA264_04260 0.21 -0.7 984,822 + CA264_04260 0.21 -0.3 984,823 - CA264_04260 0.21 -0.7 984,823 - CA264_04260 0.21 +0.3 984,823 - CA264_04260 0.21 +1.4 984,824 + CA264_04260 0.21 -0.3 984,825 - CA264_04260 0.21 -0.0 984,825 - CA264_04260 0.21 -0.8 984,825 - CA264_04260 0.21 -0.1 984,856 - CA264_04260 0.23 +1.0 985,102 + CA264_04260 0.37 -0.2 985,247 - CA264_04260 0.45 +0.3 985,410 - CA264_04260 0.54 -0.8 985,456 + CA264_04260 0.57 -0.8 985,456 + CA264_04260 0.57 -0.7 985,456 + CA264_04260 0.57 -0.4 985,457 - CA264_04260 0.57 -0.6 985,457 - CA264_04260 0.57 -0.0 985,513 - CA264_04260 0.60 -0.6 985,534 - CA264_04260 0.61 -0.3 985,534 - CA264_04260 0.61 +0.3 985,662 - CA264_04260 0.69 -0.1 985,792 + CA264_04260 0.76 -0.7 985,834 + CA264_04260 0.79 -0.9 985,835 - CA264_04260 0.79 -0.2 985,850 - CA264_04260 0.80 -1.3 985,960 + CA264_04260 0.86 -0.1 985,961 - CA264_04260 0.86 +0.2 985,961 - CA264_04260 0.86 +0.5 985,961 - CA264_04260 0.86 -0.4 985,961 - CA264_04260 0.86 -0.1 985,961 - CA264_04260 0.86 +0.3 985,965 - CA264_04260 0.86 -1.5 985,970 + CA264_04260 0.86 -0.4 985,971 - CA264_04260 0.86 -0.2 985,971 - CA264_04260 0.86 +1.8 986,035 + +0.4 986,232 - +1.6 986,234 + -0.2 986,234 + +1.0 986,234 + -0.2 986,235 - -0.3 986,235 - +0.4 986,235 - -1.7 986,235 - -0.2 986,239 + -1.3 986,240 - -0.3 986,240 - -0.1 986,348 + -1.6 986,349 - +0.3 986,387 + -0.5 986,388 - -0.1 986,388 - +2.0 986,389 + -0.6 986,389 + -0.5 986,390 - -0.3 986,393 + -0.3 986,394 - -0.0 986,461 + +1.2 986,462 - -0.5 986,463 + -2.7 986,463 + +0.4 986,464 - -0.2 986,464 - +0.1 986,464 - -0.2 986,471 + +1.4 986,472 - -1.0 986,483 + -1.4 986,483 + -0.3 986,483 + -0.7 986,484 - +0.6 986,484 - +0.5 986,484 - +0.5 986,484 - -0.6 986,684 + CA264_04265 0.32 +0.1 986,729 + CA264_04265 0.39 +0.6 986,729 + CA264_04265 0.39 -1.6 986,729 + CA264_04265 0.39 -0.6 986,729 + CA264_04265 0.39 -0.0 986,729 + CA264_04265 0.39 -0.2 986,729 + CA264_04265 0.39 -0.1 986,730 - CA264_04265 0.39 -0.3 986,730 - CA264_04265 0.39 +0.0 986,730 - CA264_04265 0.39 +0.3 986,730 - CA264_04265 0.39 +0.1 986,730 - CA264_04265 0.39 -0.1 986,734 - CA264_04265 0.39 -0.3 986,832 + CA264_04265 0.55 +0.7 986,887 + CA264_04265 0.63 -1.0 986,919 - CA264_04265 0.68 +0.1 987,059 + -1.0 987,135 - -0.0 987,146 - +1.5 987,164 - -0.6 987,164 - -0.9 987,164 - +0.1 987,166 - +0.1 987,166 - -0.3 987,168 + -0.6 987,168 + +0.0 987,169 - +0.0 987,206 - -0.6
Or see this region's nucleotide sequence