Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03755 and CA264_03760 are separated by 579 nucleotides CA264_03760 and CA264_03765 are separated by 91 nucleotides CA264_03765 and CA264_03770 are separated by 178 nucleotides
CA264_03755: CA264_03755 - hypothetical protein, at 880,636 to 882,687
_03755
CA264_03760: CA264_03760 - hypothetical protein, at 883,267 to 883,659
_03760
CA264_03765: CA264_03765 - tRNA-Glu, at 883,751 to 883,825
_03765
CA264_03770: CA264_03770 - type I glyceraldehyde-3-phosphate dehydrogenase, at 884,004 to 884,996
_03770
Position (kb) 883
884 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 882.297 kb on + strand, within CA264_03755 at 882.297 kb on + strand, within CA264_03755 at 882.312 kb on + strand, within CA264_03755 at 882.312 kb on + strand, within CA264_03755 at 882.312 kb on + strand, within CA264_03755 at 882.313 kb on - strand, within CA264_03755 at 882.344 kb on - strand, within CA264_03755 at 882.356 kb on + strand, within CA264_03755 at 882.357 kb on - strand, within CA264_03755 at 882.437 kb on - strand, within CA264_03755 at 882.460 kb on - strand, within CA264_03755 at 882.475 kb on + strand, within CA264_03755 at 882.476 kb on - strand, within CA264_03755 at 882.521 kb on - strand at 882.547 kb on + strand at 882.547 kb on + strand at 882.548 kb on - strand at 882.553 kb on - strand at 882.672 kb on + strand at 882.673 kb on - strand at 882.705 kb on - strand at 882.721 kb on + strand at 882.725 kb on + strand at 882.725 kb on + strand at 882.725 kb on + strand at 882.725 kb on + strand at 882.726 kb on - strand at 882.776 kb on + strand at 882.779 kb on + strand at 882.781 kb on + strand at 882.781 kb on + strand at 882.824 kb on + strand at 882.848 kb on + strand at 882.855 kb on + strand at 882.917 kb on + strand at 882.936 kb on + strand at 882.943 kb on - strand at 883.021 kb on - strand at 883.024 kb on + strand at 883.044 kb on + strand at 883.045 kb on - strand at 883.045 kb on - strand at 883.045 kb on - strand at 883.048 kb on + strand at 883.105 kb on - strand at 883.107 kb on - strand at 883.169 kb on + strand at 883.210 kb on + strand at 883.261 kb on + strand at 883.261 kb on + strand at 883.294 kb on + strand at 883.294 kb on + strand at 883.296 kb on + strand at 883.302 kb on + strand at 883.323 kb on + strand, within CA264_03760 at 883.343 kb on + strand, within CA264_03760 at 883.343 kb on + strand, within CA264_03760 at 883.344 kb on - strand, within CA264_03760 at 883.372 kb on + strand, within CA264_03760 at 883.372 kb on + strand, within CA264_03760 at 883.373 kb on - strand, within CA264_03760 at 883.394 kb on - strand, within CA264_03760 at 883.409 kb on + strand, within CA264_03760 at 883.410 kb on - strand, within CA264_03760 at 883.410 kb on - strand, within CA264_03760 at 883.414 kb on + strand, within CA264_03760 at 883.439 kb on - strand, within CA264_03760 at 883.516 kb on - strand, within CA264_03760 at 883.517 kb on + strand, within CA264_03760 at 883.517 kb on + strand, within CA264_03760 at 883.517 kb on + strand, within CA264_03760 at 883.517 kb on + strand, within CA264_03760 at 883.518 kb on - strand, within CA264_03760 at 883.564 kb on - strand, within CA264_03760 at 883.589 kb on - strand, within CA264_03760 at 883.658 kb on - strand at 883.665 kb on - strand at 883.672 kb on - strand at 883.672 kb on - strand at 883.888 kb on + strand at 883.912 kb on + strand at 883.951 kb on + strand at 883.952 kb on - strand at 883.956 kb on + strand at 883.956 kb on + strand at 883.957 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 882,297 + CA264_03755 0.81 +0.2 882,297 + CA264_03755 0.81 -0.9 882,312 + CA264_03755 0.82 +0.5 882,312 + CA264_03755 0.82 +0.1 882,312 + CA264_03755 0.82 -0.6 882,313 - CA264_03755 0.82 -0.0 882,344 - CA264_03755 0.83 -0.3 882,356 + CA264_03755 0.84 +0.2 882,357 - CA264_03755 0.84 +0.5 882,437 - CA264_03755 0.88 +0.4 882,460 - CA264_03755 0.89 +0.2 882,475 + CA264_03755 0.90 -0.1 882,476 - CA264_03755 0.90 -0.6 882,521 - -0.5 882,547 + -0.6 882,547 + +1.0 882,548 - -0.2 882,553 - -1.1 882,672 + -1.3 882,673 - -0.1 882,705 - -0.7 882,721 + +1.0 882,725 + +1.4 882,725 + -1.6 882,725 + -0.6 882,725 + -0.7 882,726 - -0.6 882,776 + -1.7 882,779 + -1.6 882,781 + +0.2 882,781 + +0.1 882,824 + -0.9 882,848 + -1.5 882,855 + -3.2 882,917 + -0.4 882,936 + +0.5 882,943 - -0.6 883,021 - -1.4 883,024 + +0.7 883,044 + +0.3 883,045 - +2.5 883,045 - -0.6 883,045 - -0.0 883,048 + -1.1 883,105 - -2.0 883,107 - -3.2 883,169 + +1.0 883,210 + -0.4 883,261 + +0.4 883,261 + -1.0 883,294 + -1.9 883,294 + -0.9 883,296 + -1.6 883,302 + +1.0 883,323 + CA264_03760 0.14 -0.7 883,343 + CA264_03760 0.19 -0.9 883,343 + CA264_03760 0.19 +0.1 883,344 - CA264_03760 0.20 -3.4 883,372 + CA264_03760 0.27 -0.0 883,372 + CA264_03760 0.27 -0.9 883,373 - CA264_03760 0.27 -3.8 883,394 - CA264_03760 0.32 -0.6 883,409 + CA264_03760 0.36 -0.8 883,410 - CA264_03760 0.36 -2.1 883,410 - CA264_03760 0.36 -0.6 883,414 + CA264_03760 0.37 -2.0 883,439 - CA264_03760 0.44 -0.0 883,516 - CA264_03760 0.63 -2.3 883,517 + CA264_03760 0.64 -0.6 883,517 + CA264_03760 0.64 -2.0 883,517 + CA264_03760 0.64 +0.2 883,517 + CA264_03760 0.64 +0.6 883,518 - CA264_03760 0.64 -1.2 883,564 - CA264_03760 0.76 -1.7 883,589 - CA264_03760 0.82 +1.0 883,658 - -1.4 883,665 - -0.8 883,672 - -1.0 883,672 - +0.2 883,888 + +0.3 883,912 + -0.6 883,951 + -1.2 883,952 - -0.6 883,956 + -0.5 883,956 + +1.0 883,957 - -0.7
Or see this region's nucleotide sequence