Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03735

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03730 and CA264_03735 are separated by 368 nucleotidesCA264_03735 and CA264_03740 are separated by 43 nucleotides CA264_03730: CA264_03730 - hypothetical protein, at 873,139 to 873,858 _03730 CA264_03735: CA264_03735 - hypothetical protein, at 874,227 to 875,051 _03735 CA264_03740: CA264_03740 - TonB-dependent receptor, at 875,095 to 877,533 _03740 Position (kb) 874 875 876Strain fitness (log2 ratio) -2 -1 0 1 2at 873.244 kb on + strand, within CA264_03730at 873.244 kb on + strand, within CA264_03730at 873.245 kb on - strand, within CA264_03730at 873.245 kb on - strand, within CA264_03730at 873.246 kb on + strand, within CA264_03730at 873.246 kb on + strand, within CA264_03730at 873.246 kb on + strand, within CA264_03730at 873.246 kb on + strand, within CA264_03730at 873.246 kb on + strand, within CA264_03730at 873.247 kb on - strand, within CA264_03730at 873.257 kb on + strand, within CA264_03730at 873.263 kb on - strand, within CA264_03730at 873.299 kb on + strand, within CA264_03730at 873.429 kb on - strand, within CA264_03730at 873.429 kb on - strand, within CA264_03730at 873.429 kb on - strand, within CA264_03730at 873.438 kb on + strand, within CA264_03730at 873.439 kb on - strand, within CA264_03730at 873.517 kb on + strand, within CA264_03730at 873.517 kb on + strand, within CA264_03730at 873.518 kb on - strand, within CA264_03730at 873.596 kb on + strand, within CA264_03730at 873.596 kb on + strand, within CA264_03730at 873.597 kb on - strand, within CA264_03730at 873.597 kb on - strand, within CA264_03730at 873.625 kb on + strand, within CA264_03730at 873.629 kb on + strand, within CA264_03730at 873.630 kb on - strand, within CA264_03730at 873.630 kb on - strand, within CA264_03730at 873.630 kb on - strand, within CA264_03730at 873.630 kb on - strand, within CA264_03730at 873.783 kb on + strand, within CA264_03730at 873.783 kb on + strand, within CA264_03730at 873.834 kb on - strandat 873.858 kb on + strandat 873.859 kb on - strandat 873.859 kb on - strandat 873.909 kb on - strandat 873.945 kb on + strandat 873.963 kb on - strandat 873.963 kb on - strandat 873.985 kb on + strandat 873.995 kb on - strandat 874.059 kb on - strandat 874.218 kb on - strandat 874.224 kb on - strandat 874.228 kb on + strandat 874.228 kb on + strandat 874.251 kb on + strandat 874.289 kb on + strandat 874.290 kb on - strandat 874.293 kb on + strandat 874.293 kb on + strandat 874.293 kb on + strandat 874.293 kb on + strandat 874.294 kb on - strandat 874.296 kb on - strandat 874.312 kb on - strand, within CA264_03735at 874.312 kb on - strand, within CA264_03735at 874.312 kb on - strand, within CA264_03735at 874.340 kb on + strand, within CA264_03735at 874.340 kb on + strand, within CA264_03735at 874.411 kb on - strand, within CA264_03735at 874.423 kb on + strand, within CA264_03735at 874.430 kb on + strand, within CA264_03735at 874.585 kb on + strand, within CA264_03735at 874.586 kb on - strand, within CA264_03735at 874.662 kb on + strand, within CA264_03735at 874.663 kb on - strand, within CA264_03735at 874.689 kb on - strand, within CA264_03735at 874.693 kb on - strand, within CA264_03735at 874.693 kb on - strand, within CA264_03735at 874.694 kb on + strand, within CA264_03735at 874.737 kb on - strand, within CA264_03735at 874.765 kb on - strand, within CA264_03735at 874.765 kb on - strand, within CA264_03735at 874.798 kb on - strand, within CA264_03735at 874.802 kb on + strand, within CA264_03735at 874.826 kb on + strand, within CA264_03735at 874.826 kb on + strand, within CA264_03735at 874.836 kb on + strand, within CA264_03735at 874.846 kb on + strand, within CA264_03735at 874.846 kb on + strand, within CA264_03735at 874.846 kb on + strand, within CA264_03735at 874.847 kb on - strand, within CA264_03735at 874.850 kb on + strand, within CA264_03735at 874.850 kb on + strand, within CA264_03735at 874.878 kb on - strand, within CA264_03735at 874.979 kb on + strandat 874.980 kb on - strandat 875.013 kb on + strandat 875.051 kb on + strandat 875.052 kb on - strandat 875.055 kb on - strandat 875.055 kb on - strandat 875.056 kb on + strandat 875.056 kb on + strandat 875.056 kb on + strandat 875.056 kb on + strandat 875.056 kb on + strandat 875.056 kb on + strandat 875.057 kb on - strandat 875.057 kb on - strandat 875.057 kb on - strandat 875.079 kb on + strandat 875.080 kb on - strandat 875.097 kb on - strandat 875.109 kb on + strandat 875.241 kb on + strandat 875.243 kb on + strandat 875.244 kb on - strandat 875.244 kb on - strandat 875.244 kb on - strandat 875.302 kb on + strandat 875.302 kb on + strandat 875.420 kb on + strand, within CA264_03740at 875.421 kb on - strand, within CA264_03740at 875.421 kb on - strand, within CA264_03740at 875.421 kb on - strand, within CA264_03740at 875.481 kb on - strand, within CA264_03740at 875.481 kb on - strand, within CA264_03740at 875.536 kb on + strand, within CA264_03740at 875.536 kb on + strand, within CA264_03740at 875.567 kb on + strand, within CA264_03740at 875.599 kb on + strand, within CA264_03740at 875.600 kb on - strand, within CA264_03740at 875.600 kb on - strand, within CA264_03740at 875.603 kb on + strand, within CA264_03740at 875.604 kb on - strand, within CA264_03740at 875.604 kb on - strand, within CA264_03740at 875.604 kb on - strand, within CA264_03740at 875.607 kb on + strand, within CA264_03740at 875.609 kb on + strand, within CA264_03740at 875.609 kb on + strand, within CA264_03740at 875.609 kb on + strand, within CA264_03740at 875.614 kb on + strand, within CA264_03740at 875.614 kb on + strand, within CA264_03740at 875.614 kb on + strand, within CA264_03740at 875.614 kb on + strand, within CA264_03740at 875.654 kb on + strand, within CA264_03740at 875.670 kb on - strand, within CA264_03740at 875.691 kb on + strand, within CA264_03740at 875.692 kb on - strand, within CA264_03740at 875.772 kb on - strand, within CA264_03740at 875.772 kb on - strand, within CA264_03740at 875.789 kb on + strand, within CA264_03740at 875.849 kb on + strand, within CA264_03740at 875.850 kb on - strand, within CA264_03740at 875.850 kb on - strand, within CA264_03740at 875.850 kb on - strand, within CA264_03740at 875.865 kb on + strand, within CA264_03740at 875.867 kb on + strand, within CA264_03740at 875.921 kb on + strand, within CA264_03740at 875.922 kb on - strand, within CA264_03740at 875.929 kb on + strand, within CA264_03740at 875.936 kb on + strand, within CA264_03740at 875.940 kb on - strand, within CA264_03740at 875.940 kb on - strand, within CA264_03740at 875.984 kb on + strand, within CA264_03740at 875.984 kb on + strand, within CA264_03740at 875.984 kb on + strand, within CA264_03740at 875.985 kb on - strand, within CA264_03740at 876.024 kb on + strand, within CA264_03740at 876.024 kb on + strand, within CA264_03740at 876.025 kb on - strand, within CA264_03740

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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873,244 + CA264_03730 0.15 +0.5
873,244 + CA264_03730 0.15 +1.0
873,245 - CA264_03730 0.15 -0.2
873,245 - CA264_03730 0.15 +0.2
873,246 + CA264_03730 0.15 +0.7
873,246 + CA264_03730 0.15 -0.5
873,246 + CA264_03730 0.15 -0.1
873,246 + CA264_03730 0.15 +0.3
873,246 + CA264_03730 0.15 +1.5
873,247 - CA264_03730 0.15 -0.0
873,257 + CA264_03730 0.16 -0.4
873,263 - CA264_03730 0.17 +0.2
873,299 + CA264_03730 0.22 -0.0
873,429 - CA264_03730 0.40 -0.3
873,429 - CA264_03730 0.40 -0.8
873,429 - CA264_03730 0.40 -2.4
873,438 + CA264_03730 0.42 -1.0
873,439 - CA264_03730 0.42 -1.4
873,517 + CA264_03730 0.53 +0.3
873,517 + CA264_03730 0.53 -1.4
873,518 - CA264_03730 0.53 -0.6
873,596 + CA264_03730 0.63 +2.3
873,596 + CA264_03730 0.63 -0.2
873,597 - CA264_03730 0.64 -1.0
873,597 - CA264_03730 0.64 -0.4
873,625 + CA264_03730 0.68 -0.6
873,629 + CA264_03730 0.68 -0.0
873,630 - CA264_03730 0.68 +2.2
873,630 - CA264_03730 0.68 -1.0
873,630 - CA264_03730 0.68 -0.2
873,630 - CA264_03730 0.68 -0.6
873,783 + CA264_03730 0.89 -1.4
873,783 + CA264_03730 0.89 -0.0
873,834 - -0.6
873,858 + -0.5
873,859 - -0.4
873,859 - +0.5
873,909 - -0.0
873,945 + -0.3
873,963 - -0.1
873,963 - -0.3
873,985 + +0.5
873,995 - -0.0
874,059 - +0.2
874,218 - -0.3
874,224 - -0.0
874,228 + +0.1
874,228 + +0.1
874,251 + +0.5
874,289 + -0.0
874,290 - -0.5
874,293 + -0.0
874,293 + -0.4
874,293 + -0.3
874,293 + +0.7
874,294 - -0.8
874,296 - +0.8
874,312 - CA264_03735 0.10 -0.4
874,312 - CA264_03735 0.10 +0.7
874,312 - CA264_03735 0.10 +0.2
874,340 + CA264_03735 0.14 -0.4
874,340 + CA264_03735 0.14 +0.7
874,411 - CA264_03735 0.22 -0.1
874,423 + CA264_03735 0.24 -0.5
874,430 + CA264_03735 0.25 -0.0
874,585 + CA264_03735 0.43 +1.5
874,586 - CA264_03735 0.44 +1.0
874,662 + CA264_03735 0.53 +0.2
874,663 - CA264_03735 0.53 -0.2
874,689 - CA264_03735 0.56 +0.4
874,693 - CA264_03735 0.56 +0.9
874,693 - CA264_03735 0.56 +0.3
874,694 + CA264_03735 0.57 +0.2
874,737 - CA264_03735 0.62 -0.4
874,765 - CA264_03735 0.65 -0.5
874,765 - CA264_03735 0.65 -0.6
874,798 - CA264_03735 0.69 +0.2
874,802 + CA264_03735 0.70 +0.0
874,826 + CA264_03735 0.73 -0.0
874,826 + CA264_03735 0.73 -0.2
874,836 + CA264_03735 0.74 -0.8
874,846 + CA264_03735 0.75 +0.5
874,846 + CA264_03735 0.75 -0.4
874,846 + CA264_03735 0.75 +0.7
874,847 - CA264_03735 0.75 +1.3
874,850 + CA264_03735 0.76 +0.0
874,850 + CA264_03735 0.76 -0.6
874,878 - CA264_03735 0.79 +0.6
874,979 + +1.7
874,980 - +1.0
875,013 + -0.3
875,051 + +1.0
875,052 - -0.3
875,055 - +0.7
875,055 - +0.2
875,056 + -0.7
875,056 + +1.0
875,056 + -1.6
875,056 + -1.0
875,056 + -0.4
875,056 + -0.5
875,057 - -1.4
875,057 - +0.7
875,057 - -0.3
875,079 + -0.3
875,080 - +0.6
875,097 - +0.4
875,109 + +0.2
875,241 + -0.0
875,243 + +0.1
875,244 - -0.1
875,244 - -0.2
875,244 - +0.2
875,302 + +1.0
875,302 + -0.3
875,420 + CA264_03740 0.13 +1.3
875,421 - CA264_03740 0.13 +2.5
875,421 - CA264_03740 0.13 -0.0
875,421 - CA264_03740 0.13 -0.4
875,481 - CA264_03740 0.16 -1.0
875,481 - CA264_03740 0.16 -1.0
875,536 + CA264_03740 0.18 +0.6
875,536 + CA264_03740 0.18 +1.0
875,567 + CA264_03740 0.19 -1.4
875,599 + CA264_03740 0.21 -0.1
875,600 - CA264_03740 0.21 -0.2
875,600 - CA264_03740 0.21 +1.0
875,603 + CA264_03740 0.21 -1.5
875,604 - CA264_03740 0.21 +0.2
875,604 - CA264_03740 0.21 +2.0
875,604 - CA264_03740 0.21 -0.1
875,607 + CA264_03740 0.21 -1.4
875,609 + CA264_03740 0.21 -1.1
875,609 + CA264_03740 0.21 +2.5
875,609 + CA264_03740 0.21 -0.4
875,614 + CA264_03740 0.21 -0.4
875,614 + CA264_03740 0.21 -0.2
875,614 + CA264_03740 0.21 -0.0
875,614 + CA264_03740 0.21 -0.9
875,654 + CA264_03740 0.23 -0.5
875,670 - CA264_03740 0.24 +2.0
875,691 + CA264_03740 0.24 -0.1
875,692 - CA264_03740 0.24 +1.2
875,772 - CA264_03740 0.28 +0.6
875,772 - CA264_03740 0.28 -0.0
875,789 + CA264_03740 0.28 -0.8
875,849 + CA264_03740 0.31 -0.0
875,850 - CA264_03740 0.31 +0.4
875,850 - CA264_03740 0.31 +0.6
875,850 - CA264_03740 0.31 -1.4
875,865 + CA264_03740 0.32 -0.5
875,867 + CA264_03740 0.32 -0.4
875,921 + CA264_03740 0.34 -0.0
875,922 - CA264_03740 0.34 +0.1
875,929 + CA264_03740 0.34 -0.2
875,936 + CA264_03740 0.34 -1.0
875,940 - CA264_03740 0.35 +0.2
875,940 - CA264_03740 0.35 +0.0
875,984 + CA264_03740 0.36 -0.1
875,984 + CA264_03740 0.36 +0.3
875,984 + CA264_03740 0.36 -0.2
875,985 - CA264_03740 0.36 +0.1
876,024 + CA264_03740 0.38 -0.7
876,024 + CA264_03740 0.38 -1.4
876,025 - CA264_03740 0.38 -0.3

Or see this region's nucleotide sequence