Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03670

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03665 and CA264_03670 are separated by 95 nucleotidesCA264_03670 and CA264_03675 are separated by 346 nucleotides CA264_03665: CA264_03665 - FUSC family protein, at 856,405 to 857,457 _03665 CA264_03670: CA264_03670 - polyisoprenoid-binding protein, at 857,553 to 858,086 _03670 CA264_03675: CA264_03675 - hypothetical protein, at 858,433 to 859,383 _03675 Position (kb) 857 858 859Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 856.561 kb on + strand, within CA264_03665at 856.561 kb on + strand, within CA264_03665at 856.562 kb on - strand, within CA264_03665at 856.562 kb on - strand, within CA264_03665at 856.562 kb on - strand, within CA264_03665at 856.599 kb on - strand, within CA264_03665at 856.599 kb on - strand, within CA264_03665at 856.599 kb on - strand, within CA264_03665at 856.693 kb on + strand, within CA264_03665at 856.720 kb on + strand, within CA264_03665at 856.721 kb on - strand, within CA264_03665at 856.721 kb on - strand, within CA264_03665at 856.723 kb on + strand, within CA264_03665at 856.724 kb on - strand, within CA264_03665at 856.729 kb on - strand, within CA264_03665at 856.729 kb on - strand, within CA264_03665at 856.869 kb on + strand, within CA264_03665at 856.873 kb on + strand, within CA264_03665at 856.873 kb on + strand, within CA264_03665at 856.873 kb on + strand, within CA264_03665at 856.874 kb on - strand, within CA264_03665at 856.874 kb on - strand, within CA264_03665at 856.939 kb on + strand, within CA264_03665at 857.201 kb on + strand, within CA264_03665at 857.202 kb on - strand, within CA264_03665at 857.244 kb on + strand, within CA264_03665at 857.251 kb on - strand, within CA264_03665at 857.251 kb on - strand, within CA264_03665at 857.258 kb on + strand, within CA264_03665at 857.259 kb on - strand, within CA264_03665at 857.402 kb on - strandat 857.402 kb on - strandat 857.455 kb on + strandat 857.456 kb on - strandat 857.481 kb on - strandat 857.536 kb on + strandat 857.538 kb on + strandat 857.538 kb on + strandat 857.566 kb on - strandat 857.746 kb on - strand, within CA264_03670at 857.796 kb on - strand, within CA264_03670at 857.840 kb on + strand, within CA264_03670at 857.840 kb on + strand, within CA264_03670at 857.926 kb on - strand, within CA264_03670at 857.980 kb on - strand, within CA264_03670at 858.063 kb on + strandat 858.063 kb on + strandat 858.064 kb on - strandat 858.086 kb on + strandat 858.086 kb on + strandat 858.086 kb on + strandat 858.090 kb on - strandat 858.090 kb on - strandat 858.115 kb on - strandat 858.158 kb on - strandat 858.158 kb on - strandat 858.190 kb on - strandat 858.229 kb on - strandat 858.250 kb on + strandat 858.278 kb on + strandat 858.472 kb on - strandat 858.499 kb on + strandat 858.499 kb on + strandat 858.499 kb on + strandat 858.499 kb on + strandat 858.502 kb on + strandat 858.504 kb on + strandat 858.505 kb on - strandat 858.505 kb on - strandat 858.550 kb on + strand, within CA264_03675at 858.551 kb on - strand, within CA264_03675at 858.551 kb on - strand, within CA264_03675at 858.551 kb on - strand, within CA264_03675at 858.553 kb on - strand, within CA264_03675at 858.566 kb on - strand, within CA264_03675at 858.740 kb on + strand, within CA264_03675at 858.740 kb on + strand, within CA264_03675at 858.741 kb on - strand, within CA264_03675at 858.741 kb on - strand, within CA264_03675at 858.779 kb on - strand, within CA264_03675at 858.779 kb on - strand, within CA264_03675at 858.877 kb on + strand, within CA264_03675at 858.900 kb on + strand, within CA264_03675

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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856,561 + CA264_03665 0.15 -0.0
856,561 + CA264_03665 0.15 -0.5
856,562 - CA264_03665 0.15 -0.5
856,562 - CA264_03665 0.15 -1.4
856,562 - CA264_03665 0.15 -0.9
856,599 - CA264_03665 0.18 -0.0
856,599 - CA264_03665 0.18 -0.3
856,599 - CA264_03665 0.18 -0.2
856,693 + CA264_03665 0.27 -0.4
856,720 + CA264_03665 0.30 -2.5
856,721 - CA264_03665 0.30 -0.1
856,721 - CA264_03665 0.30 +0.1
856,723 + CA264_03665 0.30 +1.0
856,724 - CA264_03665 0.30 -0.3
856,729 - CA264_03665 0.31 -1.3
856,729 - CA264_03665 0.31 +0.3
856,869 + CA264_03665 0.44 -0.5
856,873 + CA264_03665 0.44 +0.7
856,873 + CA264_03665 0.44 +0.8
856,873 + CA264_03665 0.44 -0.1
856,874 - CA264_03665 0.45 -0.2
856,874 - CA264_03665 0.45 -0.1
856,939 + CA264_03665 0.51 -0.6
857,201 + CA264_03665 0.76 -0.6
857,202 - CA264_03665 0.76 +0.8
857,244 + CA264_03665 0.80 -0.1
857,251 - CA264_03665 0.80 +1.0
857,251 - CA264_03665 0.80 +2.0
857,258 + CA264_03665 0.81 -0.7
857,259 - CA264_03665 0.81 -0.9
857,402 - -0.8
857,402 - -0.6
857,455 + -3.0
857,456 - -0.6
857,481 - -0.5
857,536 + +0.1
857,538 + -1.5
857,538 + -0.8
857,566 - -0.1
857,746 - CA264_03670 0.36 +0.3
857,796 - CA264_03670 0.46 -0.4
857,840 + CA264_03670 0.54 +0.4
857,840 + CA264_03670 0.54 -0.2
857,926 - CA264_03670 0.70 -0.8
857,980 - CA264_03670 0.80 -0.8
858,063 + +0.4
858,063 + +0.7
858,064 - -0.4
858,086 + +0.1
858,086 + -0.3
858,086 + +1.4
858,090 - -1.4
858,090 - -0.5
858,115 - -0.4
858,158 - -0.4
858,158 - -0.3
858,190 - +1.0
858,229 - -0.0
858,250 + +0.3
858,278 + +1.0
858,472 - -1.0
858,499 + -0.2
858,499 + -0.3
858,499 + -0.6
858,499 + -1.4
858,502 + -0.3
858,504 + +0.5
858,505 - +0.3
858,505 - -0.4
858,550 + CA264_03675 0.12 +0.6
858,551 - CA264_03675 0.12 -1.6
858,551 - CA264_03675 0.12 -0.6
858,551 - CA264_03675 0.12 +0.2
858,553 - CA264_03675 0.13 -0.0
858,566 - CA264_03675 0.14 -0.0
858,740 + CA264_03675 0.32 -1.2
858,740 + CA264_03675 0.32 +0.1
858,741 - CA264_03675 0.32 +0.2
858,741 - CA264_03675 0.32 -0.8
858,779 - CA264_03675 0.36 -0.3
858,779 - CA264_03675 0.36 +1.0
858,877 + CA264_03675 0.47 +0.2
858,900 + CA264_03675 0.49 -0.9

Or see this region's nucleotide sequence