Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02885

Experiment: marine_broth_2216 with nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02875 and CA264_02880 are separated by 33 nucleotidesCA264_02880 and CA264_02885 are separated by 35 nucleotidesCA264_02885 and CA264_02890 are separated by 138 nucleotidesCA264_02890 and CA264_02895 are separated by 188 nucleotides CA264_02875: CA264_02875 - hypothetical protein, at 657,663 to 658,712 _02875 CA264_02880: CA264_02880 - hypothetical protein, at 658,746 to 658,949 _02880 CA264_02885: CA264_02885 - hypothetical protein, at 658,985 to 659,710 _02885 CA264_02890: CA264_02890 - hypothetical protein, at 659,849 to 660,490 _02890 CA264_02895: CA264_02895 - alpha/beta hydrolase, at 660,679 to 661,674 _02895 Position (kb) 658 659 660Strain fitness (log2 ratio) -2 -1 0 1 2at 657.985 kb on + strand, within CA264_02875at 658.042 kb on + strand, within CA264_02875at 658.044 kb on + strand, within CA264_02875at 658.093 kb on + strand, within CA264_02875at 658.093 kb on + strand, within CA264_02875at 658.093 kb on + strand, within CA264_02875at 658.094 kb on - strand, within CA264_02875at 658.381 kb on + strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.382 kb on - strand, within CA264_02875at 658.423 kb on + strand, within CA264_02875at 658.482 kb on - strand, within CA264_02875at 658.556 kb on + strand, within CA264_02875at 658.578 kb on + strand, within CA264_02875at 658.579 kb on - strand, within CA264_02875at 658.579 kb on - strand, within CA264_02875at 658.592 kb on - strand, within CA264_02875at 658.719 kb on - strandat 658.719 kb on - strandat 658.719 kb on - strandat 658.748 kb on - strandat 658.785 kb on - strand, within CA264_02880at 658.793 kb on + strand, within CA264_02880at 658.794 kb on - strand, within CA264_02880at 658.965 kb on - strandat 658.979 kb on - strandat 658.979 kb on - strandat 658.982 kb on - strandat 659.001 kb on + strandat 659.005 kb on + strandat 659.005 kb on + strandat 659.006 kb on - strandat 659.006 kb on - strandat 659.007 kb on + strandat 659.172 kb on + strand, within CA264_02885at 659.188 kb on + strand, within CA264_02885at 659.189 kb on - strand, within CA264_02885at 659.244 kb on - strand, within CA264_02885at 659.247 kb on + strand, within CA264_02885at 659.247 kb on + strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.392 kb on - strand, within CA264_02885at 659.392 kb on - strand, within CA264_02885at 659.410 kb on + strand, within CA264_02885at 659.415 kb on + strand, within CA264_02885at 659.416 kb on - strand, within CA264_02885at 659.416 kb on - strand, within CA264_02885at 659.417 kb on + strand, within CA264_02885at 659.417 kb on + strand, within CA264_02885at 659.417 kb on + strand, within CA264_02885at 659.421 kb on + strand, within CA264_02885at 659.422 kb on - strand, within CA264_02885at 659.474 kb on - strand, within CA264_02885at 659.642 kb on - strandat 659.669 kb on + strandat 659.669 kb on + strandat 659.669 kb on + strandat 659.669 kb on + strandat 659.670 kb on - strandat 659.695 kb on - strandat 659.709 kb on - strandat 659.709 kb on - strandat 659.709 kb on - strandat 659.842 kb on + strandat 659.843 kb on - strandat 659.843 kb on - strandat 659.846 kb on + strandat 659.847 kb on - strandat 659.847 kb on - strandat 659.850 kb on + strandat 659.863 kb on - strandat 659.944 kb on - strand, within CA264_02890at 659.950 kb on - strand, within CA264_02890at 660.117 kb on - strand, within CA264_02890at 660.159 kb on + strand, within CA264_02890at 660.164 kb on - strand, within CA264_02890at 660.222 kb on + strand, within CA264_02890at 660.253 kb on - strand, within CA264_02890at 660.258 kb on + strand, within CA264_02890at 660.354 kb on - strand, within CA264_02890at 660.395 kb on + strand, within CA264_02890at 660.421 kb on - strand, within CA264_02890at 660.651 kb on + strandat 660.658 kb on - strandat 660.673 kb on + strandat 660.695 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
remove
657,985 + CA264_02875 0.31 -0.7
658,042 + CA264_02875 0.36 +0.6
658,044 + CA264_02875 0.36 -0.0
658,093 + CA264_02875 0.41 +2.0
658,093 + CA264_02875 0.41 +1.0
658,093 + CA264_02875 0.41 -0.3
658,094 - CA264_02875 0.41 -0.8
658,381 + CA264_02875 0.68 -0.8
658,382 - CA264_02875 0.68 -0.3
658,382 - CA264_02875 0.68 -0.7
658,382 - CA264_02875 0.68 +0.7
658,382 - CA264_02875 0.68 +0.3
658,382 - CA264_02875 0.68 -0.0
658,382 - CA264_02875 0.68 +1.0
658,382 - CA264_02875 0.68 -0.0
658,423 + CA264_02875 0.72 -0.6
658,482 - CA264_02875 0.78 +0.8
658,556 + CA264_02875 0.85 -0.2
658,578 + CA264_02875 0.87 +0.3
658,579 - CA264_02875 0.87 -1.1
658,579 - CA264_02875 0.87 +0.2
658,592 - CA264_02875 0.88 -0.2
658,719 - -0.0
658,719 - +0.3
658,719 - +0.1
658,748 - -0.6
658,785 - CA264_02880 0.19 +0.6
658,793 + CA264_02880 0.23 -0.6
658,794 - CA264_02880 0.24 +0.5
658,965 - -0.0
658,979 - -0.2
658,979 - -0.4
658,982 - +0.1
659,001 + -0.6
659,005 + +0.6
659,005 + -0.0
659,006 - -0.0
659,006 - -0.5
659,007 + +0.1
659,172 + CA264_02885 0.26 -0.4
659,188 + CA264_02885 0.28 -0.7
659,189 - CA264_02885 0.28 -0.6
659,244 - CA264_02885 0.36 -0.0
659,247 + CA264_02885 0.36 +0.3
659,247 + CA264_02885 0.36 -0.6
659,248 - CA264_02885 0.36 -0.5
659,248 - CA264_02885 0.36 -1.6
659,248 - CA264_02885 0.36 +0.3
659,248 - CA264_02885 0.36 -1.0
659,248 - CA264_02885 0.36 +0.1
659,392 - CA264_02885 0.56 -0.6
659,392 - CA264_02885 0.56 -0.5
659,410 + CA264_02885 0.59 -0.0
659,415 + CA264_02885 0.59 -2.0
659,416 - CA264_02885 0.59 -0.4
659,416 - CA264_02885 0.59 -0.3
659,417 + CA264_02885 0.60 -0.4
659,417 + CA264_02885 0.60 -0.3
659,417 + CA264_02885 0.60 +0.1
659,421 + CA264_02885 0.60 +0.2
659,422 - CA264_02885 0.60 +2.2
659,474 - CA264_02885 0.67 -0.6
659,642 - -1.1
659,669 + -0.3
659,669 + -0.2
659,669 + +1.4
659,669 + -0.7
659,670 - -1.0
659,695 - +1.0
659,709 - -0.3
659,709 - -0.0
659,709 - -0.3
659,842 + +0.1
659,843 - +1.0
659,843 - -0.1
659,846 + -0.2
659,847 - -0.8
659,847 - -0.4
659,850 + -0.2
659,863 - +1.0
659,944 - CA264_02890 0.15 +0.6
659,950 - CA264_02890 0.16 +0.7
660,117 - CA264_02890 0.42 +1.6
660,159 + CA264_02890 0.48 +0.9
660,164 - CA264_02890 0.49 -1.0
660,222 + CA264_02890 0.58 +0.0
660,253 - CA264_02890 0.63 -0.0
660,258 + CA264_02890 0.64 +0.3
660,354 - CA264_02890 0.79 +1.8
660,395 + CA264_02890 0.85 -0.4
660,421 - CA264_02890 0.89 -1.4
660,651 + -1.0
660,658 - -0.0
660,673 + +0.1
660,695 + +1.2

Or see this region's nucleotide sequence