Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02720 and CA264_02725 are separated by 61 nucleotides CA264_02725 and CA264_02730 are separated by 39 nucleotides CA264_02730 and CA264_02735 are separated by 112 nucleotides CA264_02735 and CA264_02740 are separated by 327 nucleotides
CA264_02720: CA264_02720 - peroxiredoxin, at 627,467 to 627,955
_02720
CA264_02725: CA264_02725 - hypothetical protein, at 628,017 to 628,595
_02725
CA264_02730: CA264_02730 - hypothetical protein, at 628,635 to 629,600
_02730
CA264_02735: CA264_02735 - hypothetical protein, at 629,713 to 629,955
_02735
CA264_02740: CA264_02740 - hypothetical protein, at 630,283 to 631,668
_02740
Position (kb) 628
629
630 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 627.644 kb on + strand, within CA264_02720 at 627.679 kb on - strand, within CA264_02720 at 627.679 kb on - strand, within CA264_02720 at 627.728 kb on + strand, within CA264_02720 at 627.728 kb on + strand, within CA264_02720 at 627.728 kb on + strand, within CA264_02720 at 627.751 kb on + strand, within CA264_02720 at 627.758 kb on - strand, within CA264_02720 at 627.793 kb on + strand, within CA264_02720 at 627.827 kb on + strand, within CA264_02720 at 627.827 kb on + strand, within CA264_02720 at 627.828 kb on - strand, within CA264_02720 at 627.828 kb on - strand, within CA264_02720 at 627.828 kb on - strand, within CA264_02720 at 627.832 kb on + strand, within CA264_02720 at 627.832 kb on + strand, within CA264_02720 at 627.833 kb on - strand, within CA264_02720 at 627.858 kb on - strand, within CA264_02720 at 627.858 kb on - strand, within CA264_02720 at 627.865 kb on + strand, within CA264_02720 at 627.894 kb on + strand, within CA264_02720 at 627.895 kb on - strand, within CA264_02720 at 627.951 kb on + strand at 627.959 kb on - strand at 627.996 kb on + strand at 627.997 kb on - strand at 628.067 kb on - strand at 628.067 kb on - strand at 628.089 kb on - strand, within CA264_02725 at 628.089 kb on - strand, within CA264_02725 at 628.104 kb on + strand, within CA264_02725 at 628.105 kb on - strand, within CA264_02725 at 628.105 kb on - strand, within CA264_02725 at 628.142 kb on - strand, within CA264_02725 at 628.142 kb on - strand, within CA264_02725 at 628.153 kb on + strand, within CA264_02725 at 628.153 kb on + strand, within CA264_02725 at 628.154 kb on - strand, within CA264_02725 at 628.200 kb on + strand, within CA264_02725 at 628.201 kb on - strand, within CA264_02725 at 628.330 kb on - strand, within CA264_02725 at 628.400 kb on - strand, within CA264_02725 at 628.418 kb on - strand, within CA264_02725 at 628.457 kb on + strand, within CA264_02725 at 628.457 kb on + strand, within CA264_02725 at 628.457 kb on + strand, within CA264_02725 at 628.458 kb on - strand, within CA264_02725 at 628.500 kb on - strand, within CA264_02725 at 628.500 kb on - strand, within CA264_02725 at 628.573 kb on - strand at 628.580 kb on + strand at 628.581 kb on - strand at 628.581 kb on - strand at 628.581 kb on - strand at 628.611 kb on + strand at 628.611 kb on + strand at 628.612 kb on - strand at 628.614 kb on + strand at 628.619 kb on + strand at 628.619 kb on + strand at 628.619 kb on + strand at 628.619 kb on + strand at 628.619 kb on + strand at 628.620 kb on - strand at 628.620 kb on - strand at 628.620 kb on - strand at 628.620 kb on - strand at 628.620 kb on - strand at 628.620 kb on - strand at 628.621 kb on + strand at 628.656 kb on + strand at 628.656 kb on + strand at 628.778 kb on - strand, within CA264_02730 at 628.778 kb on - strand, within CA264_02730 at 628.810 kb on - strand, within CA264_02730 at 628.945 kb on + strand, within CA264_02730 at 628.951 kb on + strand, within CA264_02730 at 628.951 kb on + strand, within CA264_02730 at 628.951 kb on + strand, within CA264_02730 at 628.952 kb on - strand, within CA264_02730 at 628.952 kb on - strand, within CA264_02730 at 628.952 kb on - strand, within CA264_02730 at 628.952 kb on - strand, within CA264_02730 at 629.213 kb on - strand, within CA264_02730 at 629.283 kb on + strand, within CA264_02730 at 629.284 kb on - strand, within CA264_02730 at 629.405 kb on - strand, within CA264_02730 at 629.405 kb on - strand, within CA264_02730 at 629.452 kb on + strand, within CA264_02730 at 629.519 kb on + strand at 629.552 kb on + strand at 629.553 kb on - strand at 629.560 kb on - strand at 629.567 kb on + strand at 629.666 kb on - strand at 629.671 kb on - strand at 629.671 kb on - strand at 629.715 kb on - strand at 629.758 kb on - strand, within CA264_02735 at 629.765 kb on - strand, within CA264_02735 at 629.859 kb on - strand, within CA264_02735 at 629.862 kb on - strand, within CA264_02735 at 629.862 kb on - strand, within CA264_02735 at 629.862 kb on - strand, within CA264_02735 at 629.863 kb on + strand, within CA264_02735 at 629.863 kb on + strand, within CA264_02735 at 629.863 kb on + strand, within CA264_02735 at 629.863 kb on + strand, within CA264_02735 at 629.863 kb on + strand, within CA264_02735 at 629.863 kb on + strand, within CA264_02735 at 629.863 kb on + strand, within CA264_02735 at 629.863 kb on + strand, within CA264_02735 at 629.863 kb on + strand, within CA264_02735 at 629.863 kb on + strand, within CA264_02735 at 629.864 kb on - strand, within CA264_02735 at 629.864 kb on - strand, within CA264_02735 at 629.864 kb on - strand, within CA264_02735 at 629.867 kb on + strand, within CA264_02735 at 629.868 kb on - strand, within CA264_02735 at 629.868 kb on - strand, within CA264_02735 at 629.934 kb on + strand at 629.934 kb on + strand at 629.934 kb on + strand at 629.935 kb on - strand at 629.938 kb on + strand at 629.939 kb on - strand at 629.939 kb on - strand at 629.945 kb on - strand at 629.967 kb on + strand at 629.968 kb on - strand at 629.975 kb on - strand at 629.975 kb on - strand at 629.982 kb on + strand at 629.983 kb on - strand at 629.990 kb on + strand at 629.991 kb on - strand at 630.009 kb on + strand at 630.010 kb on - strand at 630.013 kb on + strand at 630.014 kb on - strand at 630.014 kb on - strand at 630.023 kb on + strand at 630.031 kb on + strand at 630.250 kb on + strand at 630.251 kb on - strand at 630.252 kb on + strand at 630.252 kb on + strand at 630.252 kb on + strand at 630.252 kb on + strand at 630.252 kb on + strand at 630.253 kb on - strand at 630.253 kb on - strand at 630.253 kb on - strand at 630.255 kb on + strand at 630.255 kb on + strand at 630.255 kb on + strand at 630.256 kb on - strand at 630.285 kb on - strand at 630.330 kb on - strand at 630.330 kb on - strand at 630.341 kb on + strand at 630.390 kb on - strand at 630.393 kb on - strand at 630.396 kb on + strand at 630.409 kb on - strand at 630.504 kb on - strand, within CA264_02740
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 627,644 + CA264_02720 0.36 -0.0 627,679 - CA264_02720 0.43 -0.3 627,679 - CA264_02720 0.43 -0.7 627,728 + CA264_02720 0.53 -0.3 627,728 + CA264_02720 0.53 -0.9 627,728 + CA264_02720 0.53 -0.1 627,751 + CA264_02720 0.58 +0.6 627,758 - CA264_02720 0.60 +0.3 627,793 + CA264_02720 0.67 +0.1 627,827 + CA264_02720 0.74 -0.5 627,827 + CA264_02720 0.74 -0.3 627,828 - CA264_02720 0.74 -0.1 627,828 - CA264_02720 0.74 -0.3 627,828 - CA264_02720 0.74 +0.1 627,832 + CA264_02720 0.75 -0.0 627,832 + CA264_02720 0.75 -2.5 627,833 - CA264_02720 0.75 +0.8 627,858 - CA264_02720 0.80 -0.1 627,858 - CA264_02720 0.80 +1.0 627,865 + CA264_02720 0.81 -0.8 627,894 + CA264_02720 0.87 -0.6 627,895 - CA264_02720 0.88 -0.0 627,951 + -1.0 627,959 - -0.2 627,996 + +1.0 627,997 - +0.1 628,067 - +0.3 628,067 - -0.6 628,089 - CA264_02725 0.12 -0.0 628,089 - CA264_02725 0.12 -0.2 628,104 + CA264_02725 0.15 +0.0 628,105 - CA264_02725 0.15 -0.0 628,105 - CA264_02725 0.15 +0.3 628,142 - CA264_02725 0.22 -0.4 628,142 - CA264_02725 0.22 +0.7 628,153 + CA264_02725 0.23 -0.1 628,153 + CA264_02725 0.23 +0.5 628,154 - CA264_02725 0.24 +1.0 628,200 + CA264_02725 0.32 -0.0 628,201 - CA264_02725 0.32 +0.5 628,330 - CA264_02725 0.54 -0.2 628,400 - CA264_02725 0.66 -0.7 628,418 - CA264_02725 0.69 -0.0 628,457 + CA264_02725 0.76 -1.1 628,457 + CA264_02725 0.76 -0.3 628,457 + CA264_02725 0.76 -0.6 628,458 - CA264_02725 0.76 +0.8 628,500 - CA264_02725 0.83 -0.6 628,500 - CA264_02725 0.83 -0.0 628,573 - -0.6 628,580 + -1.6 628,581 - -0.2 628,581 - -0.0 628,581 - +1.4 628,611 + -1.1 628,611 + -0.2 628,612 - -0.1 628,614 + -0.1 628,619 + +3.6 628,619 + +1.0 628,619 + -0.6 628,619 + -0.0 628,619 + -1.3 628,620 - -0.1 628,620 - -0.0 628,620 - -0.3 628,620 - -0.3 628,620 - +1.0 628,620 - -0.2 628,621 + -0.1 628,656 + -0.4 628,656 + +0.3 628,778 - CA264_02730 0.15 -0.1 628,778 - CA264_02730 0.15 +0.7 628,810 - CA264_02730 0.18 +0.9 628,945 + CA264_02730 0.32 +0.2 628,951 + CA264_02730 0.33 +0.3 628,951 + CA264_02730 0.33 +0.5 628,951 + CA264_02730 0.33 -0.4 628,952 - CA264_02730 0.33 -0.0 628,952 - CA264_02730 0.33 +0.3 628,952 - CA264_02730 0.33 -1.2 628,952 - CA264_02730 0.33 +0.7 629,213 - CA264_02730 0.60 -0.2 629,283 + CA264_02730 0.67 +3.0 629,284 - CA264_02730 0.67 -0.2 629,405 - CA264_02730 0.80 -0.8 629,405 - CA264_02730 0.80 -0.3 629,452 + CA264_02730 0.85 +0.0 629,519 + -1.3 629,552 + +0.8 629,553 - -0.2 629,560 - +0.4 629,567 + -0.3 629,666 - -0.1 629,671 - -1.0 629,671 - -0.2 629,715 - +0.6 629,758 - CA264_02735 0.19 -0.5 629,765 - CA264_02735 0.21 -1.0 629,859 - CA264_02735 0.60 +0.3 629,862 - CA264_02735 0.61 -0.5 629,862 - CA264_02735 0.61 +0.2 629,862 - CA264_02735 0.61 -0.2 629,863 + CA264_02735 0.62 +0.2 629,863 + CA264_02735 0.62 +0.1 629,863 + CA264_02735 0.62 +1.5 629,863 + CA264_02735 0.62 -0.2 629,863 + CA264_02735 0.62 -0.7 629,863 + CA264_02735 0.62 -0.2 629,863 + CA264_02735 0.62 -0.7 629,863 + CA264_02735 0.62 +0.3 629,863 + CA264_02735 0.62 -0.8 629,863 + CA264_02735 0.62 +0.2 629,864 - CA264_02735 0.62 -0.0 629,864 - CA264_02735 0.62 +0.6 629,864 - CA264_02735 0.62 -1.6 629,867 + CA264_02735 0.63 +0.6 629,868 - CA264_02735 0.64 -2.0 629,868 - CA264_02735 0.64 +0.6 629,934 + -0.1 629,934 + +0.1 629,934 + +0.8 629,935 - +1.0 629,938 + +0.3 629,939 - -0.2 629,939 - -0.4 629,945 - -0.2 629,967 + -0.7 629,968 - +1.6 629,975 - -0.6 629,975 - -0.0 629,982 + -0.4 629,983 - +0.3 629,990 + +1.0 629,991 - +0.4 630,009 + -1.6 630,010 - -1.6 630,013 + +0.2 630,014 - -0.4 630,014 - +0.5 630,023 + -0.0 630,031 + -1.0 630,250 + +0.8 630,251 - -0.2 630,252 + +0.2 630,252 + -0.0 630,252 + -0.9 630,252 + -1.3 630,252 + -0.0 630,253 - -0.0 630,253 - -0.8 630,253 - -0.8 630,255 + +0.3 630,255 + -0.3 630,255 + -0.2 630,256 - -0.6 630,285 - +0.3 630,330 - -0.4 630,330 - -0.7 630,341 + -0.6 630,390 - -0.8 630,393 - +0.6 630,396 + +1.0 630,409 - +0.7 630,504 - CA264_02740 0.16 -0.7
Or see this region's nucleotide sequence