Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01935 and CA264_01940 are separated by 626 nucleotides CA264_01940 and CA264_01945 are separated by 146 nucleotides
CA264_01935: CA264_01935 - DNA-binding response regulator, at 449,246 to 449,884
_01935
CA264_01940: CA264_01940 - antibiotic biosynthesis monooxygenase, at 450,511 to 450,801
_01940
CA264_01945: CA264_01945 - hypothetical protein, at 450,948 to 451,724
_01945
Position (kb) 450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 449.552 kb on + strand, within CA264_01935 at 449.553 kb on - strand, within CA264_01935 at 449.566 kb on - strand, within CA264_01935 at 449.623 kb on + strand, within CA264_01935 at 449.623 kb on + strand, within CA264_01935 at 449.653 kb on + strand, within CA264_01935 at 449.653 kb on + strand, within CA264_01935 at 449.732 kb on - strand, within CA264_01935 at 449.782 kb on + strand, within CA264_01935 at 449.782 kb on + strand, within CA264_01935 at 449.794 kb on + strand, within CA264_01935 at 449.801 kb on - strand, within CA264_01935 at 449.820 kb on + strand, within CA264_01935 at 449.820 kb on + strand, within CA264_01935 at 449.869 kb on - strand at 449.869 kb on - strand at 449.896 kb on - strand at 449.941 kb on + strand at 449.943 kb on + strand at 449.943 kb on + strand at 449.943 kb on + strand at 449.943 kb on + strand at 449.944 kb on - strand at 449.944 kb on - strand at 449.947 kb on + strand at 449.947 kb on + strand at 450.057 kb on - strand at 450.074 kb on + strand at 450.081 kb on - strand at 450.081 kb on - strand at 450.081 kb on - strand at 450.084 kb on + strand at 450.111 kb on + strand at 450.112 kb on - strand at 450.112 kb on - strand at 450.151 kb on + strand at 450.152 kb on - strand at 450.185 kb on + strand at 450.185 kb on + strand at 450.330 kb on - strand at 450.350 kb on + strand at 450.351 kb on - strand at 450.389 kb on - strand at 450.391 kb on - strand at 450.439 kb on + strand at 450.512 kb on + strand at 450.580 kb on + strand, within CA264_01940 at 450.581 kb on - strand, within CA264_01940 at 450.644 kb on + strand, within CA264_01940 at 450.654 kb on - strand, within CA264_01940 at 450.771 kb on + strand, within CA264_01940 at 450.802 kb on - strand at 450.810 kb on + strand at 450.811 kb on - strand at 450.867 kb on + strand at 450.868 kb on - strand at 450.900 kb on + strand at 450.901 kb on - strand at 450.910 kb on + strand at 450.911 kb on - strand at 451.057 kb on + strand, within CA264_01945 at 451.402 kb on - strand, within CA264_01945 at 451.421 kb on - strand, within CA264_01945 at 451.462 kb on + strand, within CA264_01945 at 451.490 kb on - strand, within CA264_01945 at 451.502 kb on + strand, within CA264_01945 at 451.577 kb on - strand, within CA264_01945 at 451.597 kb on + strand, within CA264_01945 at 451.689 kb on - strand at 451.717 kb on - strand at 451.717 kb on - strand at 451.728 kb on - strand at 451.735 kb on - strand at 451.800 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 449,552 + CA264_01935 0.48 +0.5 449,553 - CA264_01935 0.48 +0.0 449,566 - CA264_01935 0.50 -0.9 449,623 + CA264_01935 0.59 -1.0 449,623 + CA264_01935 0.59 +0.5 449,653 + CA264_01935 0.64 -0.4 449,653 + CA264_01935 0.64 -3.1 449,732 - CA264_01935 0.76 +0.0 449,782 + CA264_01935 0.84 +0.4 449,782 + CA264_01935 0.84 -0.1 449,794 + CA264_01935 0.86 +1.8 449,801 - CA264_01935 0.87 +0.4 449,820 + CA264_01935 0.90 +0.6 449,820 + CA264_01935 0.90 +1.6 449,869 - -1.2 449,869 - +0.1 449,896 - -0.6 449,941 + +0.4 449,943 + -0.1 449,943 + +1.0 449,943 + +0.4 449,943 + -1.3 449,944 - +0.6 449,944 - -0.1 449,947 + +0.7 449,947 + +0.0 450,057 - +0.8 450,074 + +0.0 450,081 - +0.1 450,081 - -0.2 450,081 - -0.1 450,084 + -0.3 450,111 + -0.0 450,112 - +0.2 450,112 - +0.1 450,151 + -0.4 450,152 - +0.6 450,185 + -0.0 450,185 + +0.2 450,330 - -0.3 450,350 + -1.6 450,351 - +0.4 450,389 - -1.2 450,391 - -0.4 450,439 + -0.7 450,512 + +1.0 450,580 + CA264_01940 0.24 -0.4 450,581 - CA264_01940 0.24 +0.0 450,644 + CA264_01940 0.46 -0.8 450,654 - CA264_01940 0.49 -2.8 450,771 + CA264_01940 0.89 -0.1 450,802 - -1.1 450,810 + +0.0 450,811 - -1.1 450,867 + -0.9 450,868 - -0.6 450,900 + -0.1 450,901 - -0.4 450,910 + -0.4 450,911 - -0.3 451,057 + CA264_01945 0.14 -0.5 451,402 - CA264_01945 0.58 -1.6 451,421 - CA264_01945 0.61 +1.2 451,462 + CA264_01945 0.66 +1.0 451,490 - CA264_01945 0.70 +0.0 451,502 + CA264_01945 0.71 -0.4 451,577 - CA264_01945 0.81 +1.3 451,597 + CA264_01945 0.84 +1.0 451,689 - -2.0 451,717 - +0.3 451,717 - +0.0 451,728 - +0.0 451,735 - -0.6 451,800 + -0.8
Or see this region's nucleotide sequence