Experiment: marine_broth_2216 with nitrite 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01175 and CA264_01180 are separated by 195 nucleotides CA264_01180 and CA264_01185 are separated by 14 nucleotides
CA264_01175: CA264_01175 - hypothetical protein, at 259,419 to 262,607
_01175
CA264_01180: CA264_01180 - hypothetical protein, at 262,803 to 263,207
_01180
CA264_01185: CA264_01185 - hypothetical protein, at 263,222 to 263,761
_01185
Position (kb) 262
263
264 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 261.828 kb on + strand, within CA264_01175 at 261.829 kb on - strand, within CA264_01175 at 261.921 kb on + strand, within CA264_01175 at 261.941 kb on - strand, within CA264_01175 at 261.971 kb on + strand, within CA264_01175 at 261.972 kb on - strand, within CA264_01175 at 262.012 kb on + strand, within CA264_01175 at 262.055 kb on - strand, within CA264_01175 at 262.058 kb on - strand, within CA264_01175 at 262.082 kb on - strand, within CA264_01175 at 262.141 kb on - strand, within CA264_01175 at 262.240 kb on + strand, within CA264_01175 at 262.241 kb on - strand, within CA264_01175 at 262.241 kb on - strand, within CA264_01175 at 262.262 kb on - strand, within CA264_01175 at 262.262 kb on - strand, within CA264_01175 at 262.279 kb on + strand, within CA264_01175 at 262.280 kb on - strand, within CA264_01175 at 262.280 kb on - strand, within CA264_01175 at 262.345 kb on + strand at 262.378 kb on - strand at 262.474 kb on + strand at 262.495 kb on + strand at 262.495 kb on + strand at 262.495 kb on + strand at 262.496 kb on - strand at 262.496 kb on - strand at 262.496 kb on - strand at 262.496 kb on - strand at 262.496 kb on - strand at 262.502 kb on - strand at 262.536 kb on + strand at 262.537 kb on - strand at 262.559 kb on + strand at 262.594 kb on - strand at 262.594 kb on - strand at 262.782 kb on - strand at 262.804 kb on + strand at 262.804 kb on + strand at 262.804 kb on + strand at 262.926 kb on + strand, within CA264_01180 at 262.930 kb on + strand, within CA264_01180 at 262.930 kb on + strand, within CA264_01180 at 262.931 kb on - strand, within CA264_01180 at 263.261 kb on - strand at 263.261 kb on - strand at 263.286 kb on + strand, within CA264_01185 at 263.326 kb on + strand, within CA264_01185 at 263.608 kb on + strand, within CA264_01185 at 263.609 kb on - strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.673 kb on + strand, within CA264_01185 at 263.675 kb on + strand, within CA264_01185 at 263.675 kb on + strand, within CA264_01185 at 263.722 kb on - strand at 263.783 kb on + strand at 263.805 kb on - strand at 263.815 kb on - strand at 263.815 kb on - strand at 263.906 kb on - strand at 263.918 kb on - strand at 263.955 kb on + strand at 264.003 kb on - strand at 264.044 kb on + strand at 264.050 kb on + strand at 264.083 kb on + strand at 264.095 kb on + strand at 264.095 kb on + strand at 264.101 kb on + strand at 264.106 kb on - strand at 264.126 kb on + strand at 264.127 kb on - strand at 264.135 kb on - strand at 264.158 kb on + strand at 264.159 kb on - strand at 264.165 kb on + strand at 264.171 kb on + strand at 264.171 kb on + strand at 264.171 kb on + strand at 264.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM remove 261,828 + CA264_01175 0.76 -0.7 261,829 - CA264_01175 0.76 +0.1 261,921 + CA264_01175 0.78 -1.0 261,941 - CA264_01175 0.79 -0.3 261,971 + CA264_01175 0.80 -0.7 261,972 - CA264_01175 0.80 +0.4 262,012 + CA264_01175 0.81 +0.7 262,055 - CA264_01175 0.83 -0.3 262,058 - CA264_01175 0.83 +1.0 262,082 - CA264_01175 0.84 -0.2 262,141 - CA264_01175 0.85 -0.4 262,240 + CA264_01175 0.88 -1.3 262,241 - CA264_01175 0.88 -0.5 262,241 - CA264_01175 0.88 -0.3 262,262 - CA264_01175 0.89 -0.2 262,262 - CA264_01175 0.89 -2.6 262,279 + CA264_01175 0.90 +0.3 262,280 - CA264_01175 0.90 -0.9 262,280 - CA264_01175 0.90 -0.1 262,345 + +0.4 262,378 - +0.1 262,474 + -0.6 262,495 + -0.7 262,495 + -1.7 262,495 + -1.0 262,496 - +1.4 262,496 - -1.8 262,496 - -0.8 262,496 - -0.2 262,496 - -0.4 262,502 - -2.6 262,536 + -1.3 262,537 - -0.4 262,559 + +0.4 262,594 - -1.3 262,594 - -0.6 262,782 - +0.3 262,804 + -1.0 262,804 + -0.2 262,804 + +0.6 262,926 + CA264_01180 0.30 -1.6 262,930 + CA264_01180 0.31 +0.0 262,930 + CA264_01180 0.31 -1.1 262,931 - CA264_01180 0.32 -0.9 263,261 - -1.4 263,261 - -0.3 263,286 + CA264_01185 0.12 +0.3 263,326 + CA264_01185 0.19 -0.7 263,608 + CA264_01185 0.71 +1.0 263,609 - CA264_01185 0.72 -0.4 263,673 + CA264_01185 0.84 -0.6 263,673 + CA264_01185 0.84 -0.1 263,673 + CA264_01185 0.84 -0.8 263,673 + CA264_01185 0.84 -1.6 263,673 + CA264_01185 0.84 +1.0 263,673 + CA264_01185 0.84 -0.8 263,673 + CA264_01185 0.84 -0.9 263,675 + CA264_01185 0.84 +0.8 263,675 + CA264_01185 0.84 +0.3 263,722 - -0.8 263,783 + +2.0 263,805 - -0.3 263,815 - -0.2 263,815 - +2.6 263,906 - +0.8 263,918 - +1.2 263,955 + +0.8 264,003 - +3.0 264,044 + -0.1 264,050 + -0.7 264,083 + -0.1 264,095 + -0.4 264,095 + +0.4 264,101 + -0.2 264,106 - -0.3 264,126 + -0.2 264,127 - +0.9 264,135 - +0.7 264,158 + -2.0 264,159 - -0.0 264,165 + +0.0 264,171 + -0.7 264,171 + -0.2 264,171 + -1.2 264,172 - +2.0
Or see this region's nucleotide sequence