Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01010

Experiment: marine_broth_2216 with nitrite 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_01005 and CA264_01010 are separated by 126 nucleotidesCA264_01010 and CA264_01015 are separated by 41 nucleotides CA264_01005: CA264_01005 - group 1 glycosyl transferase, at 219,201 to 220,340 _01005 CA264_01010: CA264_01010 - group 1 glycosyl transferase, at 220,467 to 221,612 _01010 CA264_01015: CA264_01015 - glycoside hydrolase, at 221,654 to 222,613 _01015 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1 2at 219.498 kb on + strand, within CA264_01005at 219.557 kb on + strand, within CA264_01005at 219.671 kb on + strand, within CA264_01005at 219.674 kb on - strand, within CA264_01005at 219.691 kb on - strand, within CA264_01005at 219.691 kb on - strand, within CA264_01005at 219.735 kb on + strand, within CA264_01005at 219.736 kb on - strand, within CA264_01005at 219.802 kb on - strand, within CA264_01005at 219.804 kb on - strand, within CA264_01005at 219.853 kb on - strand, within CA264_01005at 219.899 kb on + strand, within CA264_01005at 219.900 kb on - strand, within CA264_01005at 219.900 kb on - strand, within CA264_01005at 220.047 kb on + strand, within CA264_01005at 220.058 kb on + strand, within CA264_01005at 220.058 kb on + strand, within CA264_01005at 220.091 kb on + strand, within CA264_01005at 220.136 kb on - strand, within CA264_01005at 220.140 kb on - strand, within CA264_01005at 220.140 kb on - strand, within CA264_01005at 220.150 kb on + strand, within CA264_01005at 220.161 kb on + strand, within CA264_01005at 220.164 kb on - strand, within CA264_01005at 220.215 kb on + strand, within CA264_01005at 220.216 kb on - strand, within CA264_01005at 220.216 kb on - strand, within CA264_01005at 220.217 kb on + strand, within CA264_01005at 220.217 kb on + strand, within CA264_01005at 220.217 kb on + strand, within CA264_01005at 220.217 kb on + strand, within CA264_01005at 220.218 kb on - strand, within CA264_01005at 220.218 kb on - strand, within CA264_01005at 220.241 kb on + strandat 220.241 kb on + strandat 220.241 kb on + strandat 220.242 kb on - strandat 220.245 kb on + strandat 220.249 kb on + strandat 220.249 kb on + strandat 220.249 kb on + strandat 220.250 kb on - strandat 220.316 kb on - strandat 220.330 kb on + strandat 220.331 kb on - strandat 220.331 kb on - strandat 220.335 kb on - strandat 220.339 kb on - strandat 220.339 kb on - strandat 220.339 kb on - strandat 220.399 kb on + strandat 220.399 kb on + strandat 220.399 kb on + strandat 220.400 kb on - strandat 220.400 kb on - strandat 220.400 kb on - strandat 220.401 kb on + strandat 220.410 kb on + strandat 220.444 kb on + strandat 220.444 kb on + strandat 220.445 kb on - strandat 220.466 kb on + strandat 220.466 kb on + strandat 220.467 kb on - strandat 220.502 kb on + strandat 220.503 kb on - strandat 220.507 kb on + strandat 220.630 kb on + strand, within CA264_01010at 220.630 kb on + strand, within CA264_01010at 220.636 kb on + strand, within CA264_01010at 220.637 kb on - strand, within CA264_01010at 220.637 kb on - strand, within CA264_01010at 220.641 kb on + strand, within CA264_01010at 220.641 kb on + strand, within CA264_01010at 220.642 kb on - strand, within CA264_01010at 220.642 kb on - strand, within CA264_01010at 220.709 kb on + strand, within CA264_01010at 220.802 kb on - strand, within CA264_01010at 220.813 kb on + strand, within CA264_01010at 220.889 kb on + strand, within CA264_01010at 220.889 kb on + strand, within CA264_01010at 220.890 kb on - strand, within CA264_01010at 220.892 kb on - strand, within CA264_01010at 220.895 kb on - strand, within CA264_01010at 220.943 kb on + strand, within CA264_01010at 220.943 kb on + strand, within CA264_01010at 220.944 kb on - strand, within CA264_01010at 220.944 kb on - strand, within CA264_01010at 220.949 kb on + strand, within CA264_01010at 220.955 kb on + strand, within CA264_01010at 220.959 kb on + strand, within CA264_01010at 221.082 kb on + strand, within CA264_01010at 221.175 kb on - strand, within CA264_01010at 221.178 kb on + strand, within CA264_01010at 221.236 kb on + strand, within CA264_01010at 221.236 kb on + strand, within CA264_01010at 221.237 kb on - strand, within CA264_01010at 221.268 kb on - strand, within CA264_01010at 221.313 kb on - strand, within CA264_01010at 221.334 kb on + strand, within CA264_01010at 221.335 kb on - strand, within CA264_01010at 221.335 kb on - strand, within CA264_01010at 221.335 kb on - strand, within CA264_01010at 221.379 kb on - strand, within CA264_01010at 221.382 kb on - strand, within CA264_01010at 221.389 kb on + strand, within CA264_01010at 221.389 kb on + strand, within CA264_01010at 221.392 kb on + strand, within CA264_01010at 221.392 kb on + strand, within CA264_01010at 221.393 kb on - strand, within CA264_01010at 221.413 kb on - strand, within CA264_01010at 221.413 kb on - strand, within CA264_01010at 221.435 kb on - strand, within CA264_01010at 221.443 kb on + strand, within CA264_01010at 221.514 kb on + strandat 221.569 kb on - strandat 221.571 kb on - strandat 221.571 kb on - strandat 221.571 kb on - strandat 221.581 kb on + strandat 221.582 kb on - strandat 221.600 kb on + strandat 221.601 kb on - strandat 221.608 kb on + strandat 221.608 kb on + strandat 221.610 kb on + strandat 221.666 kb on + strandat 221.667 kb on - strandat 221.681 kb on - strandat 221.731 kb on + strandat 221.738 kb on + strandat 221.781 kb on + strand, within CA264_01015at 221.782 kb on - strand, within CA264_01015at 221.790 kb on - strand, within CA264_01015at 221.790 kb on - strand, within CA264_01015at 221.793 kb on + strand, within CA264_01015at 221.794 kb on - strand, within CA264_01015at 221.794 kb on - strand, within CA264_01015at 221.794 kb on - strand, within CA264_01015at 221.794 kb on - strand, within CA264_01015at 221.803 kb on - strand, within CA264_01015at 221.803 kb on - strand, within CA264_01015at 221.813 kb on + strand, within CA264_01015at 221.813 kb on + strand, within CA264_01015at 221.928 kb on + strand, within CA264_01015at 221.928 kb on + strand, within CA264_01015at 222.005 kb on - strand, within CA264_01015at 222.032 kb on - strand, within CA264_01015at 222.036 kb on - strand, within CA264_01015at 222.039 kb on + strand, within CA264_01015at 222.039 kb on + strand, within CA264_01015at 222.039 kb on + strand, within CA264_01015at 222.040 kb on - strand, within CA264_01015at 222.072 kb on + strand, within CA264_01015at 222.073 kb on - strand, within CA264_01015at 222.073 kb on - strand, within CA264_01015at 222.216 kb on + strand, within CA264_01015at 222.289 kb on + strand, within CA264_01015at 222.290 kb on - strand, within CA264_01015at 222.310 kb on + strand, within CA264_01015at 222.349 kb on + strand, within CA264_01015at 222.350 kb on - strand, within CA264_01015at 222.364 kb on - strand, within CA264_01015at 222.393 kb on + strand, within CA264_01015at 222.434 kb on + strand, within CA264_01015at 222.462 kb on - strand, within CA264_01015at 222.462 kb on - strand, within CA264_01015at 222.465 kb on + strand, within CA264_01015at 222.466 kb on - strand, within CA264_01015at 222.542 kb on - strandat 222.569 kb on - strandat 222.569 kb on - strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.573 kb on - strandat 222.573 kb on - strandat 222.611 kb on + strandat 222.612 kb on - strandat 222.612 kb on - strandat 222.612 kb on - strandat 222.612 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
remove
219,498 + CA264_01005 0.26 +0.1
219,557 + CA264_01005 0.31 +0.7
219,671 + CA264_01005 0.41 -0.4
219,674 - CA264_01005 0.41 +0.4
219,691 - CA264_01005 0.43 +0.7
219,691 - CA264_01005 0.43 -0.1
219,735 + CA264_01005 0.47 +0.1
219,736 - CA264_01005 0.47 +1.3
219,802 - CA264_01005 0.53 -0.7
219,804 - CA264_01005 0.53 -0.6
219,853 - CA264_01005 0.57 -1.8
219,899 + CA264_01005 0.61 -1.4
219,900 - CA264_01005 0.61 +2.6
219,900 - CA264_01005 0.61 +0.2
220,047 + CA264_01005 0.74 -0.2
220,058 + CA264_01005 0.75 -0.6
220,058 + CA264_01005 0.75 +0.4
220,091 + CA264_01005 0.78 -1.8
220,136 - CA264_01005 0.82 +0.0
220,140 - CA264_01005 0.82 +0.5
220,140 - CA264_01005 0.82 -0.1
220,150 + CA264_01005 0.83 +1.0
220,161 + CA264_01005 0.84 +0.1
220,164 - CA264_01005 0.84 -0.9
220,215 + CA264_01005 0.89 +0.5
220,216 - CA264_01005 0.89 +0.3
220,216 - CA264_01005 0.89 +0.6
220,217 + CA264_01005 0.89 -0.2
220,217 + CA264_01005 0.89 -0.6
220,217 + CA264_01005 0.89 -0.5
220,217 + CA264_01005 0.89 -0.2
220,218 - CA264_01005 0.89 +0.2
220,218 - CA264_01005 0.89 +1.0
220,241 + +0.2
220,241 + -0.8
220,241 + -0.2
220,242 - -1.2
220,245 + -1.0
220,249 + -0.3
220,249 + +0.7
220,249 + -1.3
220,250 - -0.3
220,316 - +1.2
220,330 + +0.1
220,331 - +0.7
220,331 - -0.7
220,335 - -0.2
220,339 - -0.4
220,339 - +0.5
220,339 - +0.2
220,399 + -0.1
220,399 + +1.5
220,399 + -1.0
220,400 - -0.2
220,400 - +0.2
220,400 - -0.4
220,401 + -0.1
220,410 + +0.3
220,444 + +0.7
220,444 + +0.3
220,445 - -1.0
220,466 + +0.0
220,466 + +0.6
220,467 - +0.4
220,502 + -0.0
220,503 - +0.4
220,507 + -1.0
220,630 + CA264_01010 0.14 +0.4
220,630 + CA264_01010 0.14 +1.7
220,636 + CA264_01010 0.15 +0.3
220,637 - CA264_01010 0.15 -0.9
220,637 - CA264_01010 0.15 +0.5
220,641 + CA264_01010 0.15 +0.8
220,641 + CA264_01010 0.15 -0.2
220,642 - CA264_01010 0.15 -0.6
220,642 - CA264_01010 0.15 -0.2
220,709 + CA264_01010 0.21 -0.2
220,802 - CA264_01010 0.29 -0.1
220,813 + CA264_01010 0.30 -0.6
220,889 + CA264_01010 0.37 +0.6
220,889 + CA264_01010 0.37 -0.4
220,890 - CA264_01010 0.37 -0.5
220,892 - CA264_01010 0.37 -0.0
220,895 - CA264_01010 0.37 +1.1
220,943 + CA264_01010 0.42 -1.0
220,943 + CA264_01010 0.42 +0.2
220,944 - CA264_01010 0.42 -0.6
220,944 - CA264_01010 0.42 -1.4
220,949 + CA264_01010 0.42 +0.6
220,955 + CA264_01010 0.43 +1.6
220,959 + CA264_01010 0.43 +0.2
221,082 + CA264_01010 0.54 -0.2
221,175 - CA264_01010 0.62 +0.2
221,178 + CA264_01010 0.62 -0.2
221,236 + CA264_01010 0.67 -1.0
221,236 + CA264_01010 0.67 -0.3
221,237 - CA264_01010 0.67 +1.9
221,268 - CA264_01010 0.70 +0.5
221,313 - CA264_01010 0.74 +0.3
221,334 + CA264_01010 0.76 +0.1
221,335 - CA264_01010 0.76 +0.0
221,335 - CA264_01010 0.76 +0.0
221,335 - CA264_01010 0.76 +0.3
221,379 - CA264_01010 0.80 -0.3
221,382 - CA264_01010 0.80 -0.1
221,389 + CA264_01010 0.80 +0.5
221,389 + CA264_01010 0.80 -1.1
221,392 + CA264_01010 0.81 +0.5
221,392 + CA264_01010 0.81 -0.1
221,393 - CA264_01010 0.81 -0.5
221,413 - CA264_01010 0.83 -0.3
221,413 - CA264_01010 0.83 -0.5
221,435 - CA264_01010 0.84 +0.6
221,443 + CA264_01010 0.85 -0.3
221,514 + -0.3
221,569 - -1.1
221,571 - -0.2
221,571 - +0.3
221,571 - -0.0
221,581 + -0.3
221,582 - -1.0
221,600 + +0.2
221,601 - -0.4
221,608 + +0.3
221,608 + -0.7
221,610 + +1.0
221,666 + -0.5
221,667 - +0.8
221,681 - -0.8
221,731 + -0.0
221,738 + -0.1
221,781 + CA264_01015 0.13 +0.1
221,782 - CA264_01015 0.13 +0.6
221,790 - CA264_01015 0.14 -0.4
221,790 - CA264_01015 0.14 -0.0
221,793 + CA264_01015 0.14 -0.7
221,794 - CA264_01015 0.15 -0.3
221,794 - CA264_01015 0.15 +1.0
221,794 - CA264_01015 0.15 +2.0
221,794 - CA264_01015 0.15 -0.5
221,803 - CA264_01015 0.16 +0.5
221,803 - CA264_01015 0.16 -0.6
221,813 + CA264_01015 0.17 +0.0
221,813 + CA264_01015 0.17 -0.4
221,928 + CA264_01015 0.29 -0.8
221,928 + CA264_01015 0.29 +1.0
222,005 - CA264_01015 0.37 -1.8
222,032 - CA264_01015 0.39 -0.6
222,036 - CA264_01015 0.40 +1.0
222,039 + CA264_01015 0.40 +0.0
222,039 + CA264_01015 0.40 +0.8
222,039 + CA264_01015 0.40 +0.0
222,040 - CA264_01015 0.40 -0.6
222,072 + CA264_01015 0.44 +0.4
222,073 - CA264_01015 0.44 +0.3
222,073 - CA264_01015 0.44 +0.2
222,216 + CA264_01015 0.59 -1.8
222,289 + CA264_01015 0.66 -0.6
222,290 - CA264_01015 0.66 +1.2
222,310 + CA264_01015 0.68 +0.0
222,349 + CA264_01015 0.72 +1.0
222,350 - CA264_01015 0.72 +0.3
222,364 - CA264_01015 0.74 -0.7
222,393 + CA264_01015 0.77 -0.1
222,434 + CA264_01015 0.81 +1.5
222,462 - CA264_01015 0.84 -0.5
222,462 - CA264_01015 0.84 +0.5
222,465 + CA264_01015 0.84 +0.8
222,466 - CA264_01015 0.85 -0.2
222,542 - -0.0
222,569 - -1.0
222,569 - -0.3
222,572 + +1.0
222,572 + -0.4
222,573 - -0.4
222,573 - -0.7
222,611 + -0.2
222,612 - -0.5
222,612 - +0.4
222,612 - -0.1
222,612 - +0.2

Or see this region's nucleotide sequence