Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00130

Experiment: marine_broth_2216 with nitrite 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00125 and CA264_00130 are separated by 30 nucleotidesCA264_00130 and CA264_00135 are separated by 111 nucleotidesCA264_00135 and CA264_00140 are separated by 242 nucleotides CA264_00125: CA264_00125 - hypothetical protein, at 34,408 to 35,481 _00125 CA264_00130: CA264_00130 - glyoxalase, at 35,512 to 36,021 _00130 CA264_00135: CA264_00135 - transcriptional regulator, at 36,133 to 36,453 _00135 CA264_00140: CA264_00140 - hypothetical protein, at 36,696 to 36,908 _00140 Position (kb) 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 34.513 kb on - strandat 34.513 kb on - strandat 34.581 kb on - strand, within CA264_00125at 34.590 kb on + strand, within CA264_00125at 34.590 kb on + strand, within CA264_00125at 34.590 kb on + strand, within CA264_00125at 34.591 kb on - strand, within CA264_00125at 34.591 kb on - strand, within CA264_00125at 34.594 kb on - strand, within CA264_00125at 34.613 kb on + strand, within CA264_00125at 34.676 kb on - strand, within CA264_00125at 34.734 kb on - strand, within CA264_00125at 34.740 kb on + strand, within CA264_00125at 34.740 kb on + strand, within CA264_00125at 34.740 kb on + strand, within CA264_00125at 34.740 kb on + strand, within CA264_00125at 34.741 kb on - strand, within CA264_00125at 34.741 kb on - strand, within CA264_00125at 34.916 kb on + strand, within CA264_00125at 34.916 kb on + strand, within CA264_00125at 34.916 kb on + strand, within CA264_00125at 34.917 kb on - strand, within CA264_00125at 34.917 kb on - strand, within CA264_00125at 34.921 kb on - strand, within CA264_00125at 34.952 kb on + strand, within CA264_00125at 34.953 kb on - strand, within CA264_00125at 34.975 kb on + strand, within CA264_00125at 34.990 kb on + strand, within CA264_00125at 34.994 kb on + strand, within CA264_00125at 34.994 kb on + strand, within CA264_00125at 34.995 kb on - strand, within CA264_00125at 35.009 kb on + strand, within CA264_00125at 35.009 kb on + strand, within CA264_00125at 35.010 kb on - strand, within CA264_00125at 35.086 kb on + strand, within CA264_00125at 35.086 kb on + strand, within CA264_00125at 35.086 kb on + strand, within CA264_00125at 35.086 kb on + strand, within CA264_00125at 35.086 kb on + strand, within CA264_00125at 35.087 kb on - strand, within CA264_00125at 35.087 kb on - strand, within CA264_00125at 35.087 kb on - strand, within CA264_00125at 35.087 kb on - strand, within CA264_00125at 35.167 kb on - strand, within CA264_00125at 35.197 kb on - strand, within CA264_00125at 35.412 kb on - strandat 35.412 kb on - strandat 35.437 kb on + strandat 35.438 kb on - strandat 35.440 kb on + strandat 35.441 kb on - strandat 35.475 kb on + strandat 35.475 kb on + strandat 35.481 kb on + strandat 35.481 kb on + strandat 35.481 kb on + strandat 35.482 kb on - strandat 35.486 kb on + strandat 35.486 kb on + strandat 35.486 kb on + strandat 35.486 kb on + strandat 35.487 kb on - strandat 35.507 kb on + strandat 35.517 kb on + strandat 35.517 kb on + strandat 35.517 kb on + strandat 35.518 kb on - strandat 35.522 kb on + strandat 35.537 kb on + strandat 35.537 kb on + strandat 35.561 kb on + strandat 35.593 kb on + strand, within CA264_00130at 35.593 kb on + strand, within CA264_00130at 35.594 kb on - strand, within CA264_00130at 35.695 kb on - strand, within CA264_00130at 35.695 kb on - strand, within CA264_00130at 35.795 kb on - strand, within CA264_00130at 35.860 kb on - strand, within CA264_00130at 35.860 kb on - strand, within CA264_00130at 35.915 kb on - strand, within CA264_00130at 35.917 kb on - strand, within CA264_00130at 35.917 kb on - strand, within CA264_00130at 35.921 kb on + strand, within CA264_00130at 36.186 kb on + strand, within CA264_00135at 36.251 kb on + strand, within CA264_00135at 36.483 kb on - strandat 36.490 kb on - strandat 36.543 kb on + strandat 36.569 kb on - strandat 36.632 kb on + strandat 36.640 kb on - strandat 36.672 kb on + strandat 36.673 kb on - strandat 36.673 kb on - strandat 36.693 kb on - strandat 36.694 kb on + strandat 36.694 kb on + strandat 36.695 kb on - strandat 36.721 kb on + strand, within CA264_00140at 36.740 kb on + strand, within CA264_00140at 36.748 kb on + strand, within CA264_00140at 36.749 kb on - strand, within CA264_00140at 36.749 kb on - strand, within CA264_00140at 36.753 kb on - strand, within CA264_00140at 36.753 kb on - strand, within CA264_00140at 36.773 kb on - strand, within CA264_00140at 36.791 kb on - strand, within CA264_00140at 36.819 kb on + strand, within CA264_00140at 36.868 kb on + strand, within CA264_00140at 36.920 kb on - strandat 36.932 kb on + strandat 36.932 kb on + strandat 36.933 kb on - strandat 36.933 kb on - strandat 36.933 kb on - strandat 36.933 kb on - strandat 36.934 kb on + strandat 36.935 kb on - strandat 36.965 kb on + strandat 36.965 kb on + strandat 36.965 kb on + strandat 36.966 kb on - strandat 36.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine_broth_2216 with nitrite 20 mM
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34,513 - +0.4
34,513 - -0.2
34,581 - CA264_00125 0.16 -0.9
34,590 + CA264_00125 0.17 +1.0
34,590 + CA264_00125 0.17 +2.0
34,590 + CA264_00125 0.17 +0.4
34,591 - CA264_00125 0.17 +0.6
34,591 - CA264_00125 0.17 -0.3
34,594 - CA264_00125 0.17 +0.4
34,613 + CA264_00125 0.19 -0.0
34,676 - CA264_00125 0.25 +0.0
34,734 - CA264_00125 0.30 -0.5
34,740 + CA264_00125 0.31 -0.1
34,740 + CA264_00125 0.31 -0.0
34,740 + CA264_00125 0.31 -0.2
34,740 + CA264_00125 0.31 +0.0
34,741 - CA264_00125 0.31 -0.1
34,741 - CA264_00125 0.31 -2.3
34,916 + CA264_00125 0.47 -0.6
34,916 + CA264_00125 0.47 -0.7
34,916 + CA264_00125 0.47 +1.6
34,917 - CA264_00125 0.47 -1.3
34,917 - CA264_00125 0.47 +0.6
34,921 - CA264_00125 0.48 +0.4
34,952 + CA264_00125 0.51 +1.0
34,953 - CA264_00125 0.51 -1.0
34,975 + CA264_00125 0.53 -1.9
34,990 + CA264_00125 0.54 +0.6
34,994 + CA264_00125 0.55 -1.1
34,994 + CA264_00125 0.55 -1.9
34,995 - CA264_00125 0.55 -0.4
35,009 + CA264_00125 0.56 -0.5
35,009 + CA264_00125 0.56 +1.4
35,010 - CA264_00125 0.56 -0.9
35,086 + CA264_00125 0.63 -0.8
35,086 + CA264_00125 0.63 -0.6
35,086 + CA264_00125 0.63 +0.2
35,086 + CA264_00125 0.63 -0.6
35,086 + CA264_00125 0.63 -0.9
35,087 - CA264_00125 0.63 +0.3
35,087 - CA264_00125 0.63 -1.4
35,087 - CA264_00125 0.63 +0.3
35,087 - CA264_00125 0.63 -0.4
35,167 - CA264_00125 0.71 -1.0
35,197 - CA264_00125 0.73 +0.9
35,412 - -1.0
35,412 - -0.2
35,437 + +1.0
35,438 - +0.8
35,440 + +0.6
35,441 - -0.4
35,475 + -0.6
35,475 + -0.9
35,481 + -1.3
35,481 + +0.4
35,481 + -1.1
35,482 - +0.0
35,486 + -1.0
35,486 + +0.4
35,486 + -3.0
35,486 + -0.8
35,487 - +0.6
35,507 + +0.0
35,517 + -0.4
35,517 + -0.2
35,517 + -0.0
35,518 - +0.3
35,522 + -1.3
35,537 + -0.6
35,537 + -0.8
35,561 + -0.6
35,593 + CA264_00130 0.16 -0.9
35,593 + CA264_00130 0.16 +1.0
35,594 - CA264_00130 0.16 -0.5
35,695 - CA264_00130 0.36 -1.1
35,695 - CA264_00130 0.36 -0.6
35,795 - CA264_00130 0.55 +0.0
35,860 - CA264_00130 0.68 -0.6
35,860 - CA264_00130 0.68 -1.0
35,915 - CA264_00130 0.79 -1.4
35,917 - CA264_00130 0.79 -0.4
35,917 - CA264_00130 0.79 -0.6
35,921 + CA264_00130 0.80 -0.3
36,186 + CA264_00135 0.17 -0.5
36,251 + CA264_00135 0.37 -1.0
36,483 - -0.5
36,490 - -0.9
36,543 + +0.4
36,569 - +1.0
36,632 + -1.8
36,640 - -0.3
36,672 + -1.6
36,673 - -1.6
36,673 - -0.2
36,693 - +0.0
36,694 + -0.2
36,694 + +0.7
36,695 - -0.5
36,721 + CA264_00140 0.12 +0.5
36,740 + CA264_00140 0.21 +0.5
36,748 + CA264_00140 0.24 -0.6
36,749 - CA264_00140 0.25 -0.3
36,749 - CA264_00140 0.25 -0.5
36,753 - CA264_00140 0.27 -0.4
36,753 - CA264_00140 0.27 -0.0
36,773 - CA264_00140 0.36 -2.0
36,791 - CA264_00140 0.45 +2.8
36,819 + CA264_00140 0.58 +0.1
36,868 + CA264_00140 0.81 +0.4
36,920 - +0.6
36,932 + +0.3
36,932 + -0.9
36,933 - -0.6
36,933 - -0.8
36,933 - +0.3
36,933 - -0.2
36,934 + -0.3
36,935 - +0.0
36,965 + -0.8
36,965 + +0.0
36,965 + +0.7
36,966 - -0.7
36,966 - +1.0

Or see this region's nucleotide sequence