Strain Fitness in Escherichia coli BW25113 around b4239

Experiment: 2,4-Dinitrophenol 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2,4-Dinitrophenol 1 mM
4,460,100	+	nrdD	b4238	0.73	+0.2
4,460,168	-	nrdD	b4238	0.76	-0.1
4,460,186	+	nrdD	b4238	0.77	-0.4
4,460,196	+	nrdD	b4238	0.77	+0.5
4,460,196	+	nrdD	b4238	0.77	+0.0
4,460,218	+	nrdD	b4238	0.78	+0.5
4,460,225	+	nrdD	b4238	0.79	-0.0
4,460,225	+	nrdD	b4238	0.79	+0.0
4,460,238	-	nrdD	b4238	0.79	-0.6
4,460,243	+	nrdD	b4238	0.79	+0.6
4,460,260	-	nrdD	b4238	0.80	+0.0
4,460,360	-	nrdD	b4238	0.85	-0.3
4,460,371	+	nrdD	b4238	0.85	-0.1
4,460,371	+	nrdD	b4238	0.85	-0.2
4,460,387	+	nrdD	b4238	0.86	+0.1
4,460,447	-	nrdD	b4238	0.89	-0.2
4,460,447	-	nrdD	b4238	0.89	-0.0
4,460,504	-				+0.2
4,460,504	-				-0.5
4,460,542	-				-1.4
4,460,547	-				+0.1
4,460,554	+				-0.0
4,460,661	+				+0.3
4,460,820	+				+0.0
4,460,876	+				+0.3
4,460,891	-				-0.4
4,460,891	-				-0.7
4,461,038	+				-0.7
4,461,038	+				+0.4
4,461,080	+				+0.2
4,461,097	-				+1.2
4,461,128	+				-1.7
4,461,145	+				-0.7
4,461,190	-				-1.9
4,461,295	+	treC	b4239	0.13	+0.5
4,461,314	+	treC	b4239	0.14	-1.9
4,461,427	+	treC	b4239	0.21	-1.0
4,461,533	+	treC	b4239	0.28	+0.1
4,461,533	+	treC	b4239	0.28	-0.9
4,461,857	-	treC	b4239	0.47	+0.1
4,461,957	-	treC	b4239	0.53	-0.0
4,461,977	-	treC	b4239	0.54	-1.8
4,462,007	+	treC	b4239	0.56	-1.5
4,462,145	+	treC	b4239	0.64	+0.0
4,462,223	-	treC	b4239	0.69	-0.1
4,462,251	+	treC	b4239	0.71	-0.0
4,462,328	+	treC	b4239	0.76	-1.5
4,462,328	+	treC	b4239	0.76	-1.5
4,462,333	+	treC	b4239	0.76	-1.6
4,462,358	-	treC	b4239	0.77	-0.9
4,462,415	+	treC	b4239	0.81	-1.3
4,462,421	+	treC	b4239	0.81	+0.2
4,462,421	+	treC	b4239	0.81	-1.8
4,462,422	-	treC	b4239	0.81	+0.1
4,462,447	-	treC	b4239	0.83	+0.1
4,462,447	-	treC	b4239	0.83	+0.5
4,462,526	+	treC	b4239	0.88	+0.5
4,462,526	+	treC	b4239	0.88	-0.5
4,462,613	+				-0.2
4,462,655	+				-0.0
4,462,736	-				+0.4
4,462,742	-				+0.2
4,462,742	-				+0.3
4,462,747	-				-0.3
4,462,810	-				+0.3
4,462,810	-				-0.8
4,462,824	+				+0.3
4,462,840	-				+0.3
4,462,858	+				-0.5
4,462,872	-				+0.3
4,462,872	-				-1.3
4,462,883	-				+0.2
4,462,883	-				+0.0
4,462,964	-	treB	b4240	0.13	+0.5
4,462,964	-	treB	b4240	0.13	-1.5
4,462,965	+	treB	b4240	0.13	+0.6
4,462,976	-	treB	b4240	0.14	+0.3
4,462,982	+	treB	b4240	0.14	+0.9
4,462,982	+	treB	b4240	0.14	-0.1
4,463,014	-	treB	b4240	0.16	-0.3
4,463,045	-	treB	b4240	0.18	-0.4
4,463,155	+	treB	b4240	0.26	+1.4
4,463,184	-	treB	b4240	0.28	-0.5
4,463,185	+	treB	b4240	0.28	-0.6
4,463,193	-	treB	b4240	0.29	+0.1
4,463,193	-	treB	b4240	0.29	-0.6
4,463,194	-	treB	b4240	0.29	+0.2
4,463,202	-	treB	b4240	0.30	+0.6
4,463,228	+	treB	b4240	0.31	+0.4
4,463,237	+	treB	b4240	0.32	+0.4
4,463,237	+	treB	b4240	0.32	+0.7
4,463,237	+	treB	b4240	0.32	+0.4
4,463,241	-	treB	b4240	0.32	-0.4
4,463,260	-	treB	b4240	0.34	-1.0
4,463,261	-	treB	b4240	0.34	+0.1
4,463,261	-	treB	b4240	0.34	+1.3
4,463,297	+	treB	b4240	0.36	+0.4
4,463,297	+	treB	b4240	0.36	+0.2
4,463,300	-	treB	b4240	0.36	+1.0
4,463,300	-	treB	b4240	0.36	+0.7
4,463,305	-	treB	b4240	0.37	-0.9
4,463,319	-	treB	b4240	0.38	-0.7
4,463,319	-	treB	b4240	0.38	+1.4
4,463,356	+	treB	b4240	0.40	-0.2
4,463,360	-	treB	b4240	0.41	-0.2
4,463,364	-	treB	b4240	0.41	-0.8
4,463,373	-	treB	b4240	0.42	+1.3
4,463,373	-	treB	b4240	0.42	+0.2
4,463,382	+	treB	b4240	0.42	+0.2
4,463,412	+	treB	b4240	0.44	-0.5
4,463,426	+	treB	b4240	0.45	+0.3
4,463,431	-	treB	b4240	0.46	+0.3
4,463,509	+	treB	b4240	0.51	+0.6
4,463,519	+	treB	b4240	0.52	+0.3
4,463,561	-				+0.1
4,463,585	+	treB	b4240	0.56	-0.4
4,463,585	+	treB	b4240	0.56	+0.0
4,463,640	-	treB	b4240	0.60	+0.9
4,463,640	-	treB	b4240	0.60	+0.3