Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3668

Experiment: LB_plus_SM_buffer with Ffm_phage 0.01875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3666 and GFF3667 are separated by 172 nucleotidesGFF3667 and GFF3668 are separated by 113 nucleotidesGFF3668 and GFF3669 are separated by 155 nucleotidesGFF3669 and GFF3670 are separated by 280 nucleotides GFF3666 - Putative metalloprotease yggG (EC 3.4.24.-), at 15,660 to 16,421 GFF3666 GFF3667 - Cytidylate kinase (EC 2.7.4.25), at 16,594 to 17,277 GFF3667 GFF3668 - SSU ribosomal protein S1p, at 17,391 to 19,064 GFF3668 GFF3669 - Integration host factor beta subunit, at 19,220 to 19,504 GFF3669 GFF3670 - DNA internalization-related competence protein ComEC/Rec2, at 19,785 to 21,998 GFF3670 Position (kb) 17 18 19 20Strain fitness (log2 ratio) -3 -2 -1 0 1at 16.476 kb on - strandat 16.718 kb on + strand, within GFF3667at 17.068 kb on - strand, within GFF3667at 17.068 kb on - strand, within GFF3667at 17.296 kb on + strandat 19.109 kb on - strandat 19.136 kb on + strandat 19.315 kb on + strand, within GFF3669at 19.315 kb on + strand, within GFF3669at 19.562 kb on + strandat 19.763 kb on - strandat 19.766 kb on - strandat 19.789 kb on + strandat 19.799 kb on - strandat 19.808 kb on + strandat 19.888 kb on + strandat 20.004 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.01875 MOI
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16,476 - -0.1
16,718 + GFF3667 0.18 +0.9
17,068 - GFF3667 0.69 -3.7
17,068 - GFF3667 0.69 -2.4
17,296 + -0.0
19,109 - -0.8
19,136 + -0.8
19,315 + GFF3669 0.33 +0.9
19,315 + GFF3669 0.33 +0.8
19,562 + -0.6
19,763 - -0.1
19,766 - -0.2
19,789 + +0.2
19,799 - -0.2
19,808 + +0.2
19,888 + +0.0
20,004 - -0.5

Or see this region's nucleotide sequence