Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1330

Experiment: LB_plus_SM_buffer with Ffm_phage 0.01875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1328 and GFF1329 overlap by 10 nucleotidesGFF1329 and GFF1330 are separated by 268 nucleotidesGFF1330 and GFF1331 are separated by 122 nucleotides GFF1328 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17), at 37,200 to 38,036 GFF1328 GFF1329 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17), at 38,027 to 38,197 GFF1329 GFF1330 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 38,466 to 39,644 GFF1330 GFF1331 - LysR-family transcriptional regulator STM3020, at 39,767 to 40,630 GFF1331 Position (kb) 38 39 40Strain fitness (log2 ratio) -1 0 1at 37.471 kb on - strand, within GFF1328at 37.540 kb on + strand, within GFF1328at 37.550 kb on + strand, within GFF1328at 37.551 kb on - strand, within GFF1328at 37.721 kb on + strand, within GFF1328at 37.723 kb on + strand, within GFF1328at 37.793 kb on + strand, within GFF1328at 37.794 kb on - strand, within GFF1328at 37.845 kb on - strand, within GFF1328at 37.845 kb on - strand, within GFF1328at 37.845 kb on - strand, within GFF1328at 37.902 kb on - strand, within GFF1328at 37.905 kb on - strand, within GFF1328at 37.905 kb on - strand, within GFF1328at 37.922 kb on - strand, within GFF1328at 37.932 kb on - strand, within GFF1328at 37.953 kb on - strandat 38.019 kb on - strandat 38.188 kb on + strandat 38.708 kb on + strand, within GFF1330at 38.764 kb on + strand, within GFF1330at 38.765 kb on - strand, within GFF1330at 38.765 kb on - strand, within GFF1330at 38.765 kb on - strand, within GFF1330at 38.765 kb on - strand, within GFF1330at 38.767 kb on - strand, within GFF1330at 38.913 kb on - strand, within GFF1330at 38.931 kb on + strand, within GFF1330at 38.936 kb on + strand, within GFF1330at 38.936 kb on + strand, within GFF1330at 39.026 kb on + strand, within GFF1330at 39.026 kb on + strand, within GFF1330at 39.112 kb on + strand, within GFF1330at 39.113 kb on - strand, within GFF1330at 39.113 kb on - strand, within GFF1330at 39.213 kb on + strand, within GFF1330at 39.294 kb on - strand, within GFF1330at 39.398 kb on + strand, within GFF1330at 39.398 kb on + strand, within GFF1330at 39.478 kb on - strand, within GFF1330at 39.478 kb on - strand, within GFF1330at 39.769 kb on - strandat 39.969 kb on - strand, within GFF1331at 39.971 kb on + strand, within GFF1331at 39.972 kb on - strand, within GFF1331at 40.007 kb on - strand, within GFF1331at 40.058 kb on - strand, within GFF1331at 40.058 kb on - strand, within GFF1331at 40.116 kb on + strand, within GFF1331at 40.116 kb on + strand, within GFF1331at 40.117 kb on - strand, within GFF1331at 40.196 kb on + strand, within GFF1331at 40.197 kb on - strand, within GFF1331at 40.267 kb on + strand, within GFF1331at 40.298 kb on + strand, within GFF1331at 40.425 kb on + strand, within GFF1331at 40.425 kb on + strand, within GFF1331at 40.426 kb on - strand, within GFF1331at 40.429 kb on + strand, within GFF1331at 40.429 kb on + strand, within GFF1331at 40.430 kb on - strand, within GFF1331at 40.430 kb on - strand, within GFF1331at 40.430 kb on - strand, within GFF1331at 40.604 kb on + strandat 40.607 kb on + strandat 40.607 kb on + strandat 40.635 kb on + strandat 40.639 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.01875 MOI
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37,471 - GFF1328 0.32 +0.4
37,540 + GFF1328 0.41 +0.0
37,550 + GFF1328 0.42 +0.5
37,551 - GFF1328 0.42 -0.1
37,721 + GFF1328 0.62 +0.1
37,723 + GFF1328 0.62 +0.1
37,793 + GFF1328 0.71 -0.9
37,794 - GFF1328 0.71 -0.6
37,845 - GFF1328 0.77 +0.1
37,845 - GFF1328 0.77 -0.1
37,845 - GFF1328 0.77 -0.2
37,902 - GFF1328 0.84 +0.0
37,905 - GFF1328 0.84 -0.2
37,905 - GFF1328 0.84 -0.1
37,922 - GFF1328 0.86 +0.7
37,932 - GFF1328 0.87 +0.1
37,953 - -0.2
38,019 - -0.0
38,188 + +0.2
38,708 + GFF1330 0.21 +0.0
38,764 + GFF1330 0.25 +1.1
38,765 - GFF1330 0.25 -0.2
38,765 - GFF1330 0.25 +0.8
38,765 - GFF1330 0.25 +0.7
38,765 - GFF1330 0.25 +0.5
38,767 - GFF1330 0.26 -0.1
38,913 - GFF1330 0.38 +0.6
38,931 + GFF1330 0.39 +0.9
38,936 + GFF1330 0.40 +0.3
38,936 + GFF1330 0.40 +0.6
39,026 + GFF1330 0.47 -0.1
39,026 + GFF1330 0.47 +0.7
39,112 + GFF1330 0.55 +0.1
39,113 - GFF1330 0.55 +0.5
39,113 - GFF1330 0.55 -0.0
39,213 + GFF1330 0.63 +1.1
39,294 - GFF1330 0.70 +0.3
39,398 + GFF1330 0.79 +0.5
39,398 + GFF1330 0.79 +0.0
39,478 - GFF1330 0.86 -0.1
39,478 - GFF1330 0.86 -0.2
39,769 - +0.2
39,969 - GFF1331 0.23 -0.1
39,971 + GFF1331 0.24 +0.2
39,972 - GFF1331 0.24 +0.2
40,007 - GFF1331 0.28 -0.0
40,058 - GFF1331 0.34 -0.3
40,058 - GFF1331 0.34 -0.5
40,116 + GFF1331 0.40 -0.2
40,116 + GFF1331 0.40 +0.6
40,117 - GFF1331 0.41 -1.2
40,196 + GFF1331 0.50 +0.1
40,197 - GFF1331 0.50 -0.1
40,267 + GFF1331 0.58 +0.2
40,298 + GFF1331 0.61 +0.5
40,425 + GFF1331 0.76 -0.3
40,425 + GFF1331 0.76 +0.2
40,426 - GFF1331 0.76 -0.5
40,429 + GFF1331 0.77 +0.3
40,429 + GFF1331 0.77 -0.1
40,430 - GFF1331 0.77 +0.2
40,430 - GFF1331 0.77 +0.2
40,430 - GFF1331 0.77 +0.1
40,604 + +0.3
40,607 + +0.3
40,607 + -0.2
40,635 + -0.2
40,639 + -0.5

Or see this region's nucleotide sequence