Strain Fitness in Escherichia coli BW25113 around b2683

Experiment: 2,4-Dinitrophenol 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygaY and ygaZ are separated by 123 nucleotidesygaZ and ygaH overlap by 11 nucleotidesygaH and mprA are separated by 90 nucleotidesmprA and emrA are separated by 126 nucleotides b2681: ygaY - predicted transporter (pseudogene) (RefSeq), at 2,806,338 to 2,807,515 ygaY b2682: ygaZ - predicted transporter (NCBI), at 2,807,639 to 2,808,376 ygaZ b2683: ygaH - predicted inner membrane protein (NCBI), at 2,808,366 to 2,808,701 ygaH b2684: mprA - DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI), at 2,808,792 to 2,809,322 mprA b2685: emrA - multidrug efflux system (NCBI), at 2,809,449 to 2,810,621 emrA Position (kb) 2808 2809Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2807.604 kb on + strandat 2807.646 kb on + strandat 2807.646 kb on + strandat 2807.853 kb on - strand, within ygaZat 2807.917 kb on - strand, within ygaZat 2807.917 kb on - strand, within ygaZat 2807.919 kb on - strand, within ygaZat 2808.115 kb on - strand, within ygaZat 2808.115 kb on - strand, within ygaZat 2808.190 kb on + strand, within ygaZat 2808.190 kb on + strand, within ygaZat 2808.198 kb on - strand, within ygaZat 2808.322 kb on - strandat 2808.322 kb on - strandat 2808.379 kb on - strandat 2808.379 kb on - strandat 2808.399 kb on - strandat 2808.515 kb on + strand, within ygaHat 2808.517 kb on - strand, within ygaHat 2808.533 kb on + strand, within ygaHat 2808.533 kb on + strand, within ygaHat 2808.534 kb on - strand, within ygaHat 2808.534 kb on - strand, within ygaHat 2808.560 kb on - strand, within ygaHat 2808.565 kb on - strandat 2808.645 kb on + strand, within ygaHat 2808.645 kb on + strand, within ygaHat 2808.645 kb on + strand, within ygaHat 2808.648 kb on - strand, within ygaHat 2808.655 kb on + strand, within ygaHat 2808.658 kb on - strand, within ygaHat 2808.660 kb on - strand, within ygaHat 2808.662 kb on + strand, within ygaHat 2808.662 kb on + strand, within ygaHat 2808.671 kb on - strandat 2808.876 kb on - strand, within mprAat 2809.004 kb on - strand, within mprAat 2809.100 kb on + strand, within mprAat 2809.100 kb on + strand, within mprAat 2809.107 kb on + strand, within mprAat 2809.200 kb on + strand, within mprAat 2809.287 kb on + strandat 2809.433 kb on - strandat 2809.497 kb on + strandat 2809.497 kb on + strandat 2809.546 kb on - strandat 2809.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2,4-Dinitrophenol 1 mM
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2,807,604 + -0.4
2,807,646 + +0.8
2,807,646 + +0.2
2,807,853 - ygaZ b2682 0.29 +0.3
2,807,917 - ygaZ b2682 0.38 -0.2
2,807,917 - ygaZ b2682 0.38 +0.7
2,807,919 - ygaZ b2682 0.38 +0.2
2,808,115 - ygaZ b2682 0.64 +0.5
2,808,115 - ygaZ b2682 0.64 +0.4
2,808,190 + ygaZ b2682 0.75 +0.3
2,808,190 + ygaZ b2682 0.75 -0.3
2,808,198 - ygaZ b2682 0.76 -0.3
2,808,322 - +0.3
2,808,322 - +0.4
2,808,379 - +0.2
2,808,379 - +0.6
2,808,399 - +0.4
2,808,515 + ygaH b2683 0.44 -0.7
2,808,517 - ygaH b2683 0.45 +0.5
2,808,533 + ygaH b2683 0.50 -1.7
2,808,533 + ygaH b2683 0.50 -1.1
2,808,534 - ygaH b2683 0.50 +0.3
2,808,534 - ygaH b2683 0.50 +0.4
2,808,560 - ygaH b2683 0.58 -0.3
2,808,565 - +0.5
2,808,645 + ygaH b2683 0.83 +0.1
2,808,645 + ygaH b2683 0.83 -0.1
2,808,645 + ygaH b2683 0.83 +0.4
2,808,648 - ygaH b2683 0.84 +0.6
2,808,655 + ygaH b2683 0.86 +0.0
2,808,658 - ygaH b2683 0.87 +0.3
2,808,660 - ygaH b2683 0.88 +0.7
2,808,662 + ygaH b2683 0.88 +0.1
2,808,662 + ygaH b2683 0.88 -0.6
2,808,671 - +0.1
2,808,876 - mprA b2684 0.16 -2.1
2,809,004 - mprA b2684 0.40 -1.7
2,809,100 + mprA b2684 0.58 +3.5
2,809,100 + mprA b2684 0.58 +2.3
2,809,107 + mprA b2684 0.59 +0.3
2,809,200 + mprA b2684 0.77 +4.4
2,809,287 + +2.0
2,809,433 - +1.5
2,809,497 + -2.7
2,809,497 + -1.2
2,809,546 - -3.5
2,809,548 - -0.8

Or see this region's nucleotide sequence