Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4596

Experiment: LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4595 and GFF4596 are separated by 114 nucleotidesGFF4596 and GFF4597 are separated by 281 nucleotidesGFF4597 and GFF4598 are separated by 51 nucleotides GFF4595 - TcuR: regulates tcuABC genes used in utilization of tricarballylate, at 385,897 to 386,823 GFF4595 GFF4596 - Ferric uptake regulation protein FUR, at 386,938 to 387,390 GFF4596 GFF4597 - Flavodoxin 1, at 387,672 to 388,301 GFF4597 GFF4598 - Uncharacterized protein ybfE, at 388,353 to 388,646 GFF4598 Position (kb) 386 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1at 386.480 kb on + strand, within GFF4595at 386.511 kb on + strand, within GFF4595at 386.772 kb on + strandat 386.791 kb on - strandat 386.807 kb on - strandat 386.940 kb on - strandat 387.009 kb on - strand, within GFF4596at 387.225 kb on - strand, within GFF4596at 387.272 kb on + strand, within GFF4596at 387.368 kb on - strandat 387.470 kb on - strandat 387.561 kb on + strandat 387.577 kb on - strandat 387.608 kb on - strandat 387.650 kb on + strandat 388.382 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI
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386,480 + GFF4595 0.63 -0.4
386,511 + GFF4595 0.66 +0.3
386,772 + +0.4
386,791 - +1.6
386,807 - +0.0
386,940 - +0.9
387,009 - GFF4596 0.16 -1.2
387,225 - GFF4596 0.63 -2.1
387,272 + GFF4596 0.74 -2.7
387,368 - -2.9
387,470 - +0.9
387,561 + +0.1
387,577 - +0.6
387,608 - -0.2
387,650 + -0.2
388,382 + +0.4

Or see this region's nucleotide sequence