Experiment: LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4562 and GFF4563 are separated by 217 nucleotides GFF4563 and GFF4564 overlap by 4 nucleotides
GFF4562 - TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN, at 347,292 to 348,287
GFF4562
GFF4563 - FIG00637867: hypothetical protein, at 348,505 to 349,119
GFF4563
GFF4564 - Putative molecular chaperone, DnaJ family, at 349,116 to 350,549
GFF4564
Position (kb) 348
349
350 Strain fitness (log2 ratio) -2
-1
0
1 at 347.548 kb on + strand, within GFF4562 at 347.591 kb on - strand, within GFF4562 at 347.606 kb on - strand, within GFF4562 at 347.632 kb on + strand, within GFF4562 at 347.636 kb on - strand, within GFF4562 at 347.747 kb on + strand, within GFF4562 at 347.747 kb on + strand, within GFF4562 at 347.747 kb on + strand, within GFF4562 at 347.747 kb on + strand, within GFF4562 at 347.747 kb on + strand, within GFF4562 at 347.748 kb on - strand, within GFF4562 at 347.750 kb on - strand, within GFF4562 at 347.750 kb on - strand, within GFF4562 at 347.784 kb on + strand, within GFF4562 at 347.785 kb on - strand, within GFF4562 at 347.869 kb on + strand, within GFF4562 at 347.929 kb on + strand, within GFF4562 at 347.971 kb on - strand, within GFF4562 at 348.646 kb on + strand, within GFF4563 at 348.670 kb on + strand, within GFF4563 at 348.703 kb on + strand, within GFF4563 at 348.704 kb on - strand, within GFF4563 at 348.871 kb on + strand, within GFF4563 at 348.907 kb on + strand, within GFF4563 at 348.908 kb on - strand, within GFF4563 at 348.908 kb on - strand, within GFF4563 at 348.922 kb on + strand, within GFF4563 at 348.932 kb on + strand, within GFF4563 at 348.951 kb on - strand, within GFF4563 at 349.005 kb on + strand, within GFF4563 at 349.006 kb on - strand, within GFF4563 at 349.763 kb on - strand, within GFF4564 at 349.881 kb on + strand, within GFF4564 at 349.881 kb on + strand, within GFF4564 at 349.882 kb on - strand, within GFF4564 at 349.882 kb on - strand, within GFF4564 at 349.884 kb on + strand, within GFF4564 at 350.085 kb on + strand, within GFF4564 at 350.085 kb on + strand, within GFF4564 at 350.085 kb on + strand, within GFF4564 at 350.086 kb on - strand, within GFF4564
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI remove 347,548 + GFF4562 0.26 +0.2 347,591 - GFF4562 0.30 +0.8 347,606 - GFF4562 0.32 -0.4 347,632 + GFF4562 0.34 +0.0 347,636 - GFF4562 0.35 -0.1 347,747 + GFF4562 0.46 +0.5 347,747 + GFF4562 0.46 -0.4 347,747 + GFF4562 0.46 +0.8 347,747 + GFF4562 0.46 +0.7 347,747 + GFF4562 0.46 +0.3 347,748 - GFF4562 0.46 -0.4 347,750 - GFF4562 0.46 -0.7 347,750 - GFF4562 0.46 -0.3 347,784 + GFF4562 0.49 -0.1 347,785 - GFF4562 0.49 +0.3 347,869 + GFF4562 0.58 -0.3 347,929 + GFF4562 0.64 +0.4 347,971 - GFF4562 0.68 +0.3 348,646 + GFF4563 0.23 -0.2 348,670 + GFF4563 0.27 +0.3 348,703 + GFF4563 0.32 +0.7 348,704 - GFF4563 0.32 -0.4 348,871 + GFF4563 0.60 +0.8 348,907 + GFF4563 0.65 +0.4 348,908 - GFF4563 0.66 +1.7 348,908 - GFF4563 0.66 -0.1 348,922 + GFF4563 0.68 +0.8 348,932 + GFF4563 0.69 +0.5 348,951 - GFF4563 0.73 +0.5 349,005 + GFF4563 0.81 -0.1 349,006 - GFF4563 0.81 +0.0 349,763 - GFF4564 0.45 -0.6 349,881 + GFF4564 0.53 +0.4 349,881 + GFF4564 0.53 -0.8 349,882 - GFF4564 0.53 -0.4 349,882 - GFF4564 0.53 +0.4 349,884 + GFF4564 0.54 +0.5 350,085 + GFF4564 0.68 +0.4 350,085 + GFF4564 0.68 +0.2 350,085 + GFF4564 0.68 -0.4 350,086 - GFF4564 0.68 -1.8
Or see this region's nucleotide sequence