Experiment: LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2575 and GFF2576 are separated by 76 nucleotides GFF2576 and GFF2577 are separated by 177 nucleotides
GFF2575 - L-asparagine permease, at 96,267 to 97,760
GFF2575
GFF2576 - Putative outer membrane lipoprotein, at 97,837 to 98,025
GFF2576
GFF2577 - FIG00638561: hypothetical protein, at 98,203 to 99,264
GFF2577
Position (kb) 97
98
99 Strain fitness (log2 ratio) -1
0
1 at 96.896 kb on + strand, within GFF2575 at 97.069 kb on - strand, within GFF2575 at 97.170 kb on + strand, within GFF2575 at 97.172 kb on + strand, within GFF2575 at 97.185 kb on - strand, within GFF2575 at 97.191 kb on - strand, within GFF2575 at 97.323 kb on + strand, within GFF2575 at 97.353 kb on + strand, within GFF2575 at 97.354 kb on - strand, within GFF2575 at 97.377 kb on + strand, within GFF2575 at 97.452 kb on - strand, within GFF2575 at 97.518 kb on - strand, within GFF2575 at 97.538 kb on + strand, within GFF2575 at 97.538 kb on + strand, within GFF2575 at 97.564 kb on + strand, within GFF2575 at 97.564 kb on + strand, within GFF2575 at 97.611 kb on + strand at 97.611 kb on + strand at 97.614 kb on - strand at 97.614 kb on - strand at 97.641 kb on - strand at 97.798 kb on + strand at 97.849 kb on - strand at 97.906 kb on - strand, within GFF2576 at 97.907 kb on + strand, within GFF2576 at 97.907 kb on + strand, within GFF2576 at 98.141 kb on + strand at 98.344 kb on - strand, within GFF2577 at 98.355 kb on - strand, within GFF2577 at 98.355 kb on - strand, within GFF2577 at 98.406 kb on - strand, within GFF2577 at 98.416 kb on - strand, within GFF2577 at 98.565 kb on + strand, within GFF2577 at 98.565 kb on + strand, within GFF2577 at 98.602 kb on - strand, within GFF2577 at 98.769 kb on + strand, within GFF2577 at 98.770 kb on - strand, within GFF2577 at 98.799 kb on - strand, within GFF2577 at 98.863 kb on - strand, within GFF2577 at 98.863 kb on - strand, within GFF2577 at 98.896 kb on + strand, within GFF2577 at 98.897 kb on - strand, within GFF2577 at 98.897 kb on - strand, within GFF2577
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI remove 96,896 + GFF2575 0.42 -0.1 97,069 - GFF2575 0.54 -0.1 97,170 + GFF2575 0.60 -0.3 97,172 + GFF2575 0.61 -0.2 97,185 - GFF2575 0.61 -1.0 97,191 - GFF2575 0.62 -0.7 97,323 + GFF2575 0.71 -0.1 97,353 + GFF2575 0.73 +0.4 97,354 - GFF2575 0.73 -0.1 97,377 + GFF2575 0.74 -0.2 97,452 - GFF2575 0.79 +0.9 97,518 - GFF2575 0.84 +0.2 97,538 + GFF2575 0.85 -0.2 97,538 + GFF2575 0.85 -0.5 97,564 + GFF2575 0.87 +0.1 97,564 + GFF2575 0.87 +0.2 97,611 + -0.1 97,611 + +0.1 97,614 - +1.1 97,614 - -0.3 97,641 - -0.3 97,798 + +0.7 97,849 - +0.7 97,906 - GFF2576 0.37 -0.6 97,907 + GFF2576 0.37 -1.1 97,907 + GFF2576 0.37 -0.6 98,141 + -0.0 98,344 - GFF2577 0.13 +0.3 98,355 - GFF2577 0.14 -0.4 98,355 - GFF2577 0.14 -0.1 98,406 - GFF2577 0.19 +0.2 98,416 - GFF2577 0.20 -0.5 98,565 + GFF2577 0.34 -0.3 98,565 + GFF2577 0.34 -1.0 98,602 - GFF2577 0.38 +0.2 98,769 + GFF2577 0.53 -0.1 98,770 - GFF2577 0.53 +0.3 98,799 - GFF2577 0.56 +0.0 98,863 - GFF2577 0.62 -1.5 98,863 - GFF2577 0.62 +0.3 98,896 + GFF2577 0.65 -0.4 98,897 - GFF2577 0.65 +0.1 98,897 - GFF2577 0.65 +0.0
Or see this region's nucleotide sequence