Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2476

Experiment: LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2474 and GFF2475 overlap by 4 nucleotidesGFF2475 and GFF2476 are separated by 216 nucleotidesGFF2476 and GFF2477 are separated by 16 nucleotides GFF2474 - GTP-binding protein Era, at 92,410 to 93,315 GFF2474 GFF2475 - Ribonuclease III (EC 3.1.26.3), at 93,312 to 94,049 GFF2475 GFF2476 - Signal peptidase I (EC 3.4.21.89), at 94,266 to 95,240 GFF2476 GFF2477 - Translation elongation factor LepA, at 95,257 to 97,056 GFF2477 Position (kb) 94 95 96Strain fitness (log2 ratio) -3 -2 -1 0 1at 93.473 kb on - strand, within GFF2475at 93.759 kb on - strand, within GFF2475at 93.824 kb on - strand, within GFF2475at 94.046 kb on - strandat 94.046 kb on - strandat 94.158 kb on - strandat 94.163 kb on - strandat 94.213 kb on + strandat 94.274 kb on + strandat 95.803 kb on - strand, within GFF2477at 95.813 kb on - strand, within GFF2477at 95.817 kb on - strand, within GFF2477at 95.836 kb on - strand, within GFF2477at 95.836 kb on - strand, within GFF2477at 95.909 kb on + strand, within GFF2477at 95.910 kb on - strand, within GFF2477at 95.910 kb on - strand, within GFF2477at 95.910 kb on - strand, within GFF2477at 95.914 kb on - strand, within GFF2477at 95.943 kb on - strand, within GFF2477at 96.170 kb on + strand, within GFF2477at 96.171 kb on - strand, within GFF2477at 96.171 kb on - strand, within GFF2477

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI
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93,473 - GFF2475 0.22 -1.6
93,759 - GFF2475 0.61 -3.1
93,824 - GFF2475 0.69 -3.3
94,046 - -0.3
94,046 - +0.3
94,158 - -0.1
94,163 - -0.6
94,213 + -0.1
94,274 + -0.7
95,803 - GFF2477 0.30 -0.5
95,813 - GFF2477 0.31 -0.8
95,817 - GFF2477 0.31 -0.5
95,836 - GFF2477 0.32 -0.1
95,836 - GFF2477 0.32 +0.8
95,909 + GFF2477 0.36 -1.7
95,910 - GFF2477 0.36 -0.6
95,910 - GFF2477 0.36 -1.1
95,910 - GFF2477 0.36 -0.9
95,914 - GFF2477 0.36 -0.7
95,943 - GFF2477 0.38 -1.3
96,170 + GFF2477 0.51 -0.1
96,171 - GFF2477 0.51 -2.1
96,171 - GFF2477 0.51 -2.1

Or see this region's nucleotide sequence