Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2159

Experiment: LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2158 and GFF2159 are separated by 161 nucleotidesGFF2159 and GFF2160 are separated by 160 nucleotides GFF2158 - AIDA autotransporter-like protein, at 75 to 3,794 GFF2158 GFF2159 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 3,956 to 5,305 GFF2159 GFF2160 - 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11, at 5,466 to 6,932 GFF2160 Position (kb) 3 4 5 6Strain fitness (log2 ratio) -1 0 1 2at 2.966 kb on - strand, within GFF2158at 3.036 kb on + strand, within GFF2158at 3.052 kb on + strand, within GFF2158at 3.118 kb on - strand, within GFF2158at 3.118 kb on - strand, within GFF2158at 3.198 kb on + strand, within GFF2158at 3.213 kb on + strand, within GFF2158at 3.256 kb on - strand, within GFF2158at 3.286 kb on - strand, within GFF2158at 3.298 kb on + strand, within GFF2158at 3.327 kb on + strand, within GFF2158at 3.395 kb on + strand, within GFF2158at 3.468 kb on + strandat 3.468 kb on + strandat 3.543 kb on + strandat 3.544 kb on - strandat 3.544 kb on - strandat 3.617 kb on - strandat 3.786 kb on - strandat 5.435 kb on - strandat 5.438 kb on + strandat 5.438 kb on + strandat 5.458 kb on + strandat 5.470 kb on + strandat 5.475 kb on - strandat 5.475 kb on - strandat 5.589 kb on - strandat 5.594 kb on + strandat 6.084 kb on - strand, within GFF2160at 6.196 kb on + strand, within GFF2160at 6.263 kb on + strand, within GFF2160

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI
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2,966 - GFF2158 0.78 +0.1
3,036 + GFF2158 0.80 -0.4
3,052 + GFF2158 0.80 -0.0
3,118 - GFF2158 0.82 -0.6
3,118 - GFF2158 0.82 +0.2
3,198 + GFF2158 0.84 -0.3
3,213 + GFF2158 0.84 -0.5
3,256 - GFF2158 0.86 -0.8
3,286 - GFF2158 0.86 -0.3
3,298 + GFF2158 0.87 -0.4
3,327 + GFF2158 0.87 +0.3
3,395 + GFF2158 0.89 +0.6
3,468 + -0.1
3,468 + -0.5
3,543 + +0.2
3,544 - -0.1
3,544 - +0.6
3,617 - +0.5
3,786 - +0.6
5,435 - +0.4
5,438 + -0.3
5,438 + +0.4
5,458 + -0.9
5,470 + +0.9
5,475 - +1.4
5,475 - +2.0
5,589 - +1.6
5,594 + +0.0
6,084 - GFF2160 0.42 -0.8
6,196 + GFF2160 0.50 +0.5
6,263 + GFF2160 0.54 -0.3

Or see this region's nucleotide sequence