Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1925

Experiment: LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1924 and GFF1925 are separated by 90 nucleotidesGFF1925 and GFF1926 are separated by 210 nucleotides GFF1924 - Putative amino acid transporter, at 116,143 to 117,564 GFF1924 GFF1925 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 117,655 to 119,052 GFF1925 GFF1926 - Arginine utilization regulatory protein RocR, at 119,263 to 120,690 GFF1926 Position (kb) 117 118 119 120Strain fitness (log2 ratio) -2 -1 0 1 2at 116.697 kb on + strand, within GFF1924at 116.698 kb on - strand, within GFF1924at 116.710 kb on - strand, within GFF1924at 116.757 kb on + strand, within GFF1924at 116.757 kb on + strand, within GFF1924at 116.758 kb on - strand, within GFF1924at 116.758 kb on - strand, within GFF1924at 116.835 kb on - strand, within GFF1924at 116.835 kb on - strand, within GFF1924at 116.835 kb on - strand, within GFF1924at 116.835 kb on - strand, within GFF1924at 116.835 kb on - strand, within GFF1924at 116.835 kb on - strand, within GFF1924at 116.835 kb on - strand, within GFF1924at 117.013 kb on - strand, within GFF1924at 117.018 kb on - strand, within GFF1924at 117.088 kb on - strand, within GFF1924at 117.088 kb on - strand, within GFF1924at 117.321 kb on + strand, within GFF1924at 117.322 kb on - strand, within GFF1924at 117.542 kb on - strandat 117.608 kb on - strandat 117.608 kb on - strandat 117.654 kb on - strandat 117.762 kb on + strandat 117.763 kb on - strandat 117.953 kb on + strand, within GFF1925at 117.954 kb on - strand, within GFF1925at 117.994 kb on + strand, within GFF1925at 118.093 kb on - strand, within GFF1925at 118.142 kb on - strand, within GFF1925at 118.217 kb on + strand, within GFF1925at 118.218 kb on - strand, within GFF1925at 118.218 kb on - strand, within GFF1925at 118.222 kb on - strand, within GFF1925at 118.225 kb on - strand, within GFF1925at 118.404 kb on + strand, within GFF1925at 118.405 kb on - strand, within GFF1925at 118.596 kb on + strand, within GFF1925at 118.629 kb on + strand, within GFF1925at 118.629 kb on + strand, within GFF1925at 118.630 kb on - strand, within GFF1925at 118.656 kb on - strand, within GFF1925at 118.878 kb on + strand, within GFF1925at 118.908 kb on - strand, within GFF1925at 119.018 kb on - strandat 119.018 kb on - strandat 119.226 kb on - strandat 119.260 kb on + strandat 119.260 kb on + strandat 119.260 kb on + strandat 119.260 kb on + strandat 119.262 kb on + strandat 119.263 kb on - strandat 119.263 kb on - strandat 119.350 kb on - strandat 119.374 kb on + strandat 119.375 kb on - strandat 119.375 kb on - strandat 119.406 kb on + strand, within GFF1926at 119.406 kb on + strand, within GFF1926at 119.407 kb on - strand, within GFF1926at 119.433 kb on + strand, within GFF1926at 119.433 kb on + strand, within GFF1926at 119.472 kb on + strand, within GFF1926at 119.628 kb on + strand, within GFF1926at 119.629 kb on - strand, within GFF1926at 119.775 kb on + strand, within GFF1926at 119.837 kb on + strand, within GFF1926at 119.837 kb on + strand, within GFF1926at 119.837 kb on + strand, within GFF1926at 119.901 kb on + strand, within GFF1926at 119.916 kb on + strand, within GFF1926

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with 6F2_phage 0.0001875 MOI
remove
116,697 + GFF1924 0.39 -0.6
116,698 - GFF1924 0.39 -0.8
116,710 - GFF1924 0.40 +0.1
116,757 + GFF1924 0.43 -0.2
116,757 + GFF1924 0.43 +0.1
116,758 - GFF1924 0.43 +1.9
116,758 - GFF1924 0.43 +0.6
116,835 - GFF1924 0.49 +0.1
116,835 - GFF1924 0.49 +1.0
116,835 - GFF1924 0.49 -0.3
116,835 - GFF1924 0.49 +0.8
116,835 - GFF1924 0.49 +0.0
116,835 - GFF1924 0.49 -0.4
116,835 - GFF1924 0.49 +0.0
117,013 - GFF1924 0.61 +0.4
117,018 - GFF1924 0.62 -0.7
117,088 - GFF1924 0.66 +0.3
117,088 - GFF1924 0.66 +0.0
117,321 + GFF1924 0.83 +0.4
117,322 - GFF1924 0.83 +0.1
117,542 - -0.1
117,608 - -2.0
117,608 - +0.7
117,654 - -0.2
117,762 + -0.2
117,763 - +0.5
117,953 + GFF1925 0.21 +0.3
117,954 - GFF1925 0.21 +0.0
117,994 + GFF1925 0.24 +0.1
118,093 - GFF1925 0.31 -0.3
118,142 - GFF1925 0.35 -0.2
118,217 + GFF1925 0.40 +0.3
118,218 - GFF1925 0.40 +1.1
118,218 - GFF1925 0.40 +0.1
118,222 - GFF1925 0.41 +0.7
118,225 - GFF1925 0.41 +0.3
118,404 + GFF1925 0.54 +0.2
118,405 - GFF1925 0.54 +0.6
118,596 + GFF1925 0.67 -0.2
118,629 + GFF1925 0.70 +0.4
118,629 + GFF1925 0.70 +0.3
118,630 - GFF1925 0.70 -0.0
118,656 - GFF1925 0.72 +0.3
118,878 + GFF1925 0.87 +0.1
118,908 - GFF1925 0.90 +1.1
119,018 - -0.1
119,018 - -0.2
119,226 - +0.5
119,260 + +0.0
119,260 + +1.2
119,260 + +0.0
119,260 + -0.0
119,262 + +0.0
119,263 - -0.1
119,263 - +0.4
119,350 - +0.2
119,374 + +0.2
119,375 - +1.4
119,375 - +0.6
119,406 + GFF1926 0.10 -0.6
119,406 + GFF1926 0.10 +0.2
119,407 - GFF1926 0.10 +0.8
119,433 + GFF1926 0.12 +0.3
119,433 + GFF1926 0.12 -0.1
119,472 + GFF1926 0.15 -0.2
119,628 + GFF1926 0.26 +0.1
119,629 - GFF1926 0.26 -0.6
119,775 + GFF1926 0.36 +0.5
119,837 + GFF1926 0.40 +0.4
119,837 + GFF1926 0.40 +0.5
119,837 + GFF1926 0.40 -0.3
119,901 + GFF1926 0.45 +0.3
119,916 + GFF1926 0.46 +0.4

Or see this region's nucleotide sequence