Experiment: R2A with Lomefloxacin 0.0002 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5469 and Atu5470 are separated by 17 nucleotides Atu5470 and Atu5471 are separated by 269 nucleotides
Atu5469: Atu5469 - DNA polymerase IV, at 461,941 to 463,014
Atu5469
Atu5470: Atu5470 - hypothetical protein, at 463,032 to 463,238
Atu5470
Atu5471: Atu5471 - hypothetical protein, at 463,508 to 463,744
Atu5471
Position (kb) 463
464 Strain fitness (log2 ratio) -1
0
1
2
3 at 462.567 kb on - strand, within Atu5469 at 462.628 kb on - strand, within Atu5469 at 462.631 kb on + strand, within Atu5469 at 462.681 kb on + strand, within Atu5469 at 462.684 kb on - strand, within Atu5469 at 462.686 kb on - strand, within Atu5469 at 462.701 kb on + strand, within Atu5469 at 462.718 kb on + strand, within Atu5469 at 462.771 kb on - strand, within Atu5469 at 462.811 kb on + strand, within Atu5469 at 462.822 kb on + strand, within Atu5469 at 462.837 kb on + strand, within Atu5469 at 462.894 kb on + strand, within Atu5469 at 462.902 kb on + strand, within Atu5469 at 462.911 kb on - strand at 462.938 kb on + strand at 462.938 kb on + strand at 463.142 kb on - strand, within Atu5470 at 463.143 kb on - strand, within Atu5470 at 463.191 kb on - strand, within Atu5470 at 463.242 kb on + strand at 463.250 kb on - strand at 463.270 kb on - strand at 463.330 kb on - strand at 463.330 kb on - strand at 463.539 kb on + strand, within Atu5471 at 463.606 kb on + strand, within Atu5471 at 463.629 kb on - strand, within Atu5471 at 463.672 kb on + strand, within Atu5471 at 463.733 kb on - strand at 463.744 kb on + strand at 463.754 kb on + strand at 463.781 kb on + strand at 463.791 kb on + strand at 463.810 kb on + strand at 463.870 kb on + strand at 463.889 kb on + strand at 463.889 kb on + strand at 463.889 kb on + strand at 463.889 kb on + strand at 463.889 kb on + strand at 463.889 kb on + strand at 463.897 kb on - strand at 463.897 kb on - strand at 463.897 kb on - strand at 463.897 kb on - strand at 463.938 kb on + strand at 463.977 kb on - strand at 463.977 kb on - strand at 463.977 kb on - strand at 463.991 kb on + strand at 463.995 kb on - strand at 463.996 kb on + strand at 464.004 kb on - strand at 464.093 kb on - strand at 464.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.0002 mM remove 462,567 - Atu5469 0.58 -0.7 462,628 - Atu5469 0.64 -0.5 462,631 + Atu5469 0.64 -0.1 462,681 + Atu5469 0.69 +0.4 462,684 - Atu5469 0.69 +1.4 462,686 - Atu5469 0.69 -0.4 462,701 + Atu5469 0.71 +1.0 462,718 + Atu5469 0.72 +0.0 462,771 - Atu5469 0.77 +0.2 462,811 + Atu5469 0.81 -0.0 462,822 + Atu5469 0.82 -0.2 462,837 + Atu5469 0.83 +0.2 462,894 + Atu5469 0.89 -0.0 462,902 + Atu5469 0.89 +0.3 462,911 - +0.2 462,938 + -0.1 462,938 + +0.5 463,142 - Atu5470 0.53 -0.1 463,143 - Atu5470 0.54 +0.8 463,191 - Atu5470 0.77 +3.4 463,242 + +0.2 463,250 - -0.3 463,270 - -0.3 463,330 - -0.3 463,330 - -0.4 463,539 + Atu5471 0.13 -0.4 463,606 + Atu5471 0.41 -0.8 463,629 - Atu5471 0.51 -0.9 463,672 + Atu5471 0.69 -0.9 463,733 - +0.7 463,744 + +0.1 463,754 + +1.6 463,781 + +0.6 463,791 + -0.2 463,810 + +1.3 463,870 + -0.0 463,889 + +0.4 463,889 + +0.4 463,889 + -0.3 463,889 + -0.3 463,889 + +0.0 463,889 + -0.3 463,897 - -0.2 463,897 - +0.7 463,897 - +0.0 463,897 - -0.7 463,938 + +0.4 463,977 - -1.5 463,977 - -0.6 463,977 - -0.5 463,991 + +0.2 463,995 - -0.2 463,996 + +0.5 464,004 - +1.0 464,093 - -0.3 464,093 - +0.6
Or see this region's nucleotide sequence