Strain Fitness in Escherichia coli BW25113 around b3423

Experiment: 2,4-Dinitrophenol 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2,4-Dinitrophenol 2 mM
3,556,933	-	rtcR	b3422	0.40	+0.0
3,556,940	-	rtcR	b3422	0.41	+0.2
3,556,956	+	rtcR	b3422	0.42	+0.3
3,556,973	-	rtcR	b3422	0.43	+0.8
3,556,973	-	rtcR	b3422	0.43	-1.7
3,556,986	-	rtcR	b3422	0.44	-0.5
3,557,003	-	rtcR	b3422	0.45	+0.3
3,557,008	-	rtcR	b3422	0.45	+0.1
3,557,019	+	rtcR	b3422	0.46	+0.8
3,557,029	+	rtcR	b3422	0.46	+0.2
3,557,034	+	rtcR	b3422	0.47	+0.6
3,557,042	-	rtcR	b3422	0.47	+0.7
3,557,042	-	rtcR	b3422	0.47	-1.3
3,557,166	+	rtcR	b3422	0.55	-0.1
3,557,179	-	rtcR	b3422	0.56	-0.3
3,557,179	-	rtcR	b3422	0.56	+0.3
3,557,218	+	rtcR	b3422	0.58	-0.6
3,557,246	+	rtcR	b3422	0.60	-0.1
3,557,246	+	rtcR	b3422	0.60	+0.5
3,557,280	+	rtcR	b3422	0.62	+0.6
3,557,345	+	rtcR	b3422	0.66	-0.1
3,557,345	+	rtcR	b3422	0.66	-0.1
3,557,347	-	rtcR	b3422	0.66	-0.2
3,557,347	-	rtcR	b3422	0.66	+0.7
3,557,368	+	rtcR	b3422	0.67	+1.1
3,557,389	+	rtcR	b3422	0.69	+0.5
3,557,506	-	rtcR	b3422	0.76	+0.8
3,557,560	-	rtcR	b3422	0.79	+0.4
3,557,577	-	rtcR	b3422	0.80	-0.9
3,557,577	-	rtcR	b3422	0.80	-0.8
3,557,583	+	rtcR	b3422	0.81	-0.5
3,557,591	-	rtcR	b3422	0.81	-0.5
3,557,603	-	rtcR	b3422	0.82	-0.7
3,557,621	+	rtcR	b3422	0.83	+0.4
3,557,673	+	rtcR	b3422	0.86	+0.2
3,557,709	-	rtcR	b3422	0.89	+0.6
3,557,709	-	rtcR	b3422	0.89	-0.2
3,557,833	-				+0.2
3,557,849	+				+1.1
3,557,849	+				-3.3
3,557,881	+				-0.3
3,557,884	+				+1.9
3,557,908	-				+2.2
3,557,908	-				+0.6
3,557,948	-	glpR	b3423	0.10	+2.1
3,557,949	+	glpR	b3423	0.10	+1.9
3,557,959	+	glpR	b3423	0.12	+1.3
3,557,968	+	glpR	b3423	0.13	+1.6
3,558,019	+	glpR	b3423	0.20	+1.4
3,558,019	+	glpR	b3423	0.20	+2.2
3,558,069	+	glpR	b3423	0.26	+1.9
3,558,069	+	glpR	b3423	0.26	+1.9
3,558,101	+	glpR	b3423	0.30	+1.9
3,558,103	-	glpR	b3423	0.31	+2.5
3,558,103	-	glpR	b3423	0.31	+1.0
3,558,103	-	glpR	b3423	0.31	+1.7
3,558,104	-	glpR	b3423	0.31	+1.8
3,558,104	-	glpR	b3423	0.31	+2.4
3,558,115	+	glpR	b3423	0.32	+1.5
3,558,143	-	glpR	b3423	0.36	+1.9
3,558,156	-	glpR	b3423	0.38	+0.8
3,558,156	-	glpR	b3423	0.38	+0.8
3,558,221	-	glpR	b3423	0.46	+1.6
3,558,266	+	glpR	b3423	0.52	+1.7
3,558,301	+	glpR	b3423	0.57	+1.6
3,558,309	-	glpR	b3423	0.58	+1.4
3,558,309	-	glpR	b3423	0.58	+1.8
3,558,309	-	glpR	b3423	0.58	+1.9
3,558,309	-	glpR	b3423	0.58	+1.3
3,558,309	-	glpR	b3423	0.58	+1.8
3,558,327	+	glpR	b3423	0.60	+1.3
3,558,364	-	glpR	b3423	0.65	+2.5
3,558,364	-	glpR	b3423	0.65	+2.3
3,558,407	+	glpR	b3423	0.71	+2.1
3,558,409	+	glpR	b3423	0.71	+1.8
3,558,415	+	glpR	b3423	0.72	+1.7
3,558,523	-	glpR	b3423	0.86	+0.6
3,558,572	-				+1.6
3,558,578	+				+1.4
3,558,578	+				+1.7
3,558,588	-				+1.7
3,558,606	+				+1.3
3,558,687	+				+0.4
3,558,753	+	glpG	b3424	0.13	+0.7
3,558,766	+	glpG	b3424	0.15	+0.8
3,558,774	-	glpG	b3424	0.16	-1.3
3,558,776	+	glpG	b3424	0.16	+1.8
3,558,776	+	glpG	b3424	0.16	+1.4
3,558,791	-	glpG	b3424	0.18	-2.1
3,558,794	-	glpG	b3424	0.18	-2.1
3,558,816	-	glpG	b3424	0.21	-0.8
3,558,851	-	glpG	b3424	0.25	-0.7
3,558,855	-	glpG	b3424	0.25	+0.7
3,558,867	-	glpG	b3424	0.27	-1.0
3,558,867	-	glpG	b3424	0.27	-1.8
3,558,919	-	glpG	b3424	0.33	-1.4
3,558,921	-	glpG	b3424	0.33	+0.0
3,558,921	-	glpG	b3424	0.33	-1.9
3,558,927	-	glpG	b3424	0.34	-1.0
3,558,975	+	glpG	b3424	0.40	+0.9
3,558,991	-	glpG	b3424	0.42	-1.0
3,559,003	+	glpG	b3424	0.43	+1.1
3,559,041	-	glpG	b3424	0.48	+0.9
3,559,041	-	glpG	b3424	0.48	-1.5
3,559,049	-	glpG	b3424	0.49	-0.9
3,559,056	+	glpG	b3424	0.49	+0.8
3,559,056	+	glpG	b3424	0.49	+0.9
3,559,058	-	glpG	b3424	0.50	+0.6
3,559,058	-	glpG	b3424	0.50	-0.5
3,559,117	-	glpG	b3424	0.57	-1.3
3,559,127	-	glpG	b3424	0.58	-1.0
3,559,127	-	glpG	b3424	0.58	-0.5
3,559,129	-	glpG	b3424	0.58	+0.2
3,559,160	-	glpG	b3424	0.62	-0.6
3,559,180	+	glpG	b3424	0.64	+1.3
3,559,180	+	glpG	b3424	0.64	+0.1
3,559,185	+	glpG	b3424	0.65	+0.5
3,559,193	+	glpG	b3424	0.66	+1.1
3,559,223	+	glpG	b3424	0.70	+0.2
3,559,223	+	glpG	b3424	0.70	+1.0
3,559,234	-	glpG	b3424	0.71	+0.2
3,559,259	+	glpG	b3424	0.74	+0.8
3,559,262	-	glpG	b3424	0.74	-1.3
3,559,262	-	glpG	b3424	0.74	+0.6
3,559,325	-	glpG	b3424	0.82	-0.1
3,559,342	+	glpG	b3424	0.84	+1.1
3,559,350	-	glpG	b3424	0.85	-0.5
3,559,350	-	glpG	b3424	0.85	-0.3
3,559,350	-	glpG	b3424	0.85	-1.8
3,559,350	-	glpG	b3424	0.85	-0.5
3,559,370	+	glpG	b3424	0.87	-1.6
3,559,370	+	glpG	b3424	0.87	+2.5
3,559,383	-	glpG	b3424	0.89	-0.9
3,559,405	-				+0.3
3,559,405	-				+0.2
3,559,419	-				+0.9
3,559,419	-				-1.0
3,559,439	-				-1.2
3,559,510	+				+0.9
3,559,510	+				+1.8
3,559,518	-				-1.6
3,559,583	+	glpE	b3425	0.19	-0.4
3,559,584	+	glpE	b3425	0.20	-0.6
3,559,587	-	glpE	b3425	0.20	-1.6
3,559,592	-	glpE	b3425	0.22	-1.7
3,559,592	-	glpE	b3425	0.22	+1.1
3,559,603	-	glpE	b3425	0.25	-1.5
3,559,624	-	glpE	b3425	0.32	-1.4