Experiment: L-Lysine 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04390 and PS417_04395 overlap by 4 nucleotides PS417_04395 and PS417_04400 are separated by 114 nucleotides PS417_04400 and PS417_04405 are separated by 23 nucleotides PS417_04405 and PS417_04410 are separated by 25 nucleotides PS417_04410 and PS417_04415 are separated by 8 nucleotides PS417_04415 and PS417_04420 are separated by 128 nucleotides
PS417_04390: PS417_04390 - toluene tolerance protein, at 978,445 to 979,095
_04390
PS417_04395: PS417_04395 - anti-sigma factor antagonist, at 979,092 to 979,397
_04395
PS417_04400: PS417_04400 - BolA family transcriptional regulator, at 979,512 to 979,751
_04400
PS417_04405: PS417_04405 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 979,775 to 981,040
_04405
PS417_04410: PS417_04410 - hypothetical protein, at 981,066 to 981,245
_04410
PS417_04415: PS417_04415 - ATP phosphoribosyltransferase (EC 2.4.2.17) <small>(from data)</small>, at 981,254 to 981,889
_04415
PS417_04420: PS417_04420 - histidinol dehydrogenase, at 982,018 to 983,340
_04420
Position (kb) 979
980
981
982 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 978.778 kb on + strand, within PS417_04390 at 978.779 kb on - strand, within PS417_04390 at 978.886 kb on + strand, within PS417_04390 at 978.887 kb on - strand, within PS417_04390 at 979.396 kb on - strand at 979.398 kb on + strand at 979.399 kb on - strand at 979.405 kb on + strand at 979.406 kb on - strand at 979.406 kb on - strand at 979.409 kb on - strand at 979.436 kb on - strand at 981.056 kb on - strand at 981.056 kb on - strand at 981.149 kb on + strand, within PS417_04410 at 981.150 kb on - strand, within PS417_04410 at 981.182 kb on - strand, within PS417_04410 at 981.227 kb on + strand, within PS417_04410 at 981.425 kb on + strand, within PS417_04415 at 981.425 kb on + strand, within PS417_04415 at 981.464 kb on - strand, within PS417_04415 at 981.483 kb on - strand, within PS417_04415 at 981.500 kb on + strand, within PS417_04415 at 981.501 kb on - strand, within PS417_04415 at 981.501 kb on - strand, within PS417_04415 at 981.501 kb on - strand, within PS417_04415 at 981.623 kb on + strand, within PS417_04415 at 981.624 kb on - strand, within PS417_04415 at 981.650 kb on - strand, within PS417_04415 at 981.972 kb on - strand at 982.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 60 mM remove 978,778 + PS417_04390 0.51 -0.4 978,779 - PS417_04390 0.51 -0.6 978,886 + PS417_04390 0.68 +0.2 978,887 - PS417_04390 0.68 -0.3 979,396 - -1.0 979,398 + -1.3 979,399 - -0.6 979,405 + -0.5 979,406 - -1.3 979,406 - -0.4 979,409 - -0.7 979,436 - -3.2 981,056 - -2.4 981,056 - -0.2 981,149 + PS417_04410 0.46 +0.5 981,150 - PS417_04410 0.47 +0.1 981,182 - PS417_04410 0.64 +1.6 981,227 + PS417_04410 0.89 -1.3 981,425 + PS417_04415 0.27 -0.0 981,425 + PS417_04415 0.27 -0.9 981,464 - PS417_04415 0.33 -0.9 981,483 - PS417_04415 0.36 -2.1 981,500 + PS417_04415 0.39 -0.7 981,501 - PS417_04415 0.39 +0.6 981,501 - PS417_04415 0.39 -1.5 981,501 - PS417_04415 0.39 -0.3 981,623 + PS417_04415 0.58 +0.2 981,624 - PS417_04415 0.58 -0.8 981,650 - PS417_04415 0.62 -0.5 981,972 - -0.4 982,002 + +0.2
Or see this region's nucleotide sequence