Experiment: L-Lysine 60 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04250 and PS417_04255 are separated by 170 nucleotides PS417_04255 and PS417_04260 overlap by 1 nucleotides PS417_04260 and PS417_04265 are separated by 51 nucleotides
PS417_04250: PS417_04250 - rod shape-determining protein MreB, at 951,840 to 952,877
_04250
PS417_04255: PS417_04255 - rod shape-determining protein MreC, at 953,048 to 954,118
_04255
PS417_04260: PS417_04260 - rod shape-determining protein MreD, at 954,118 to 954,606
_04260
PS417_04265: PS417_04265 - septum formation protein Maf, at 954,658 to 955,254
_04265
Position (kb) 953
954
955 Strain fitness (log2 ratio) -2
-1
0
1 at 952.942 kb on + strand at 953.839 kb on + strand, within PS417_04255 at 954.116 kb on + strand at 954.521 kb on + strand, within PS417_04260 at 954.642 kb on - strand at 954.766 kb on - strand, within PS417_04265 at 954.899 kb on + strand, within PS417_04265 at 955.034 kb on + strand, within PS417_04265 at 955.072 kb on + strand, within PS417_04265 at 955.073 kb on - strand, within PS417_04265 at 955.117 kb on - strand, within PS417_04265 at 955.117 kb on - strand, within PS417_04265
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 60 mM remove 952,942 + +0.1 953,839 + PS417_04255 0.74 -0.5 954,116 + -0.9 954,521 + PS417_04260 0.82 +1.3 954,642 - +0.1 954,766 - PS417_04265 0.18 +0.3 954,899 + PS417_04265 0.40 -1.9 955,034 + PS417_04265 0.63 -0.5 955,072 + PS417_04265 0.69 +0.0 955,073 - PS417_04265 0.70 -0.4 955,117 - PS417_04265 0.77 -2.1 955,117 - PS417_04265 0.77 +0.3
Or see this region's nucleotide sequence